LOC113528343


Basic Information

Item Value
gene id LOC113528343
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 13463539 ~ 13475462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402926.2
CTCCGGGAACACGAGCGCTTCTTGGCTCCTCCTCGTCACCGCCGGTTTGGCTTTCTGCCACGACTGCAAGAATTATCCACATCACCACCACTACCTTGTCTAGTTTAATTATTCAGCTGTCAGGGGGCGTGTTTGAGTGCCAGCTGTGATGCAGAGAGTGAGAAGGGGAAAATGAGCTGCCAGATGCCTAGCAGATGCTAGAGAGTGATGGAGCTGACCTTACCTGCCCTGACCCAGCTGAGCTAAACTTGAGCCGGATGCtgcaattaattttaattaattttgctcattttttatgTGCTAAAAAGGTGTAGAGCAGGAAAGTGCTGTTtaataaaaagaggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402926.2 True 346 lncRNA 0.47 3 13463539 13475462

Neighbor

gene id symbol gene type direction distance location
swsap1 swsap1 coding downstream 28183 13432227 ~ 13435356 (-)
LOC113528569 NA coding downstream 195365 13241850 ~ 13268174 (-)
nfil3-6 LOC108279453 coding downstream 236664 13223244 ~ 13226875 (-)
nfil3-2 nfil3 coding downstream 243517 13210369 ~ 13220022 (-)
gcdhb gcdh,LOC107718595,LOC107653471,LOC107563244 coding downstream 358701 13096259 ~ 13104838 (-)
gadd45gip1 gadd45gip1 coding upstream 19524 13494986 ~ 13498163 (-)
nme4 LOC108276282 coding upstream 186701 13662163 ~ 13669491 (-)
xpo6 xpo6 coding upstream 195447 13670909 ~ 13695259 (-)
antkmt fam173a,LOC108276247 coding upstream 221151 13696613 ~ 13702527 (-)
LOC113528466 LOC108276218,LOC108441001 coding upstream 238938 13714400 ~ 13715455 (-)
G210640 NA non-coding downstream 17101 13445736 ~ 13446438 (-)
G210607 NA non-coding downstream 58182 13405139 ~ 13405357 (-)
LOC113528601 NA non-coding downstream 90601 13369454 ~ 13372938 (-)
G210570 NA non-coding downstream 108954 13310533 ~ 13354585 (-)
G210461 NA non-coding downstream 291473 13171841 ~ 13172066 (-)
G210690 NA non-coding upstream 49919 13525381 ~ 13525580 (-)
G210858 NA non-coding upstream 115977 13591439 ~ 13660814 (-)
G210871 NA non-coding upstream 187954 13663416 ~ 13663797 (-)
G210886 NA non-coding upstream 248089 13723551 ~ 13726829 (-)
G210888 NA non-coding upstream 256957 13732419 ~ 13786511 (-)
LOC117598755 NA other downstream 64314 13395466 ~ 13399225 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other downstream 68082 13390616 ~ 13395457 (-)
tom1 LOC108260160 other downstream 904326 12546333 ~ 12559213 (-)
msrb1a msrb1 other downstream 1124270 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 1148041 12297776 ~ 12315498 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 365704 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 518414 13993876 ~ 14001037 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other upstream 528707 14004169 ~ 14006512 (-)
pecam1 LOC108279165 other upstream 542153 14017615 ~ 14029641 (-)
G211151 usp36 other upstream 1044815 14520277 ~ 14520975 (-)

Expression


Co-expression Network