LOC113528446


Basic Information

Item Value
gene id LOC113528446
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9837250 ~ 9838412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402942.2
TACTAAAACTTTACAGTACTACAGGGCCTGCAGGATTGGAGCCCGACACCTGTCCTTCAGTATTATTGTCTTCAAGTAATAGTGAACAGAGTAGTAGTGAACAGAAATTGACAATTAAAAGGTGAAAAGAGCAGTGAAGGAACACCCCACTTATAAAGTggttctacttggattCCTCTCTGGAAGGGAAGAGGACCTTTTGTTATAATGTTCCACTGAAAACTTTTATGTGTTTCTCCCAAAATGACAAACTGAAGAATCCTAAAGGGTGCAAGATGGAACGTTCTTCTTAAAGTGTAGTCTTGAATACTGTTCAGGTAGAAGACAAATTGATTAGTAGTGTAACTGGTCTATCATTTTGTGTGTCTATTGctgtatgatatgatataatgaTGTAATCATGTGtgatgcgttttttttttccttttttttctttttaatttcccTTCTCCTATATCCATGTAGTGTTTGGTTTCTTAAACATAGTGCATGCACTGGGGGACTTGGACCACTGGGGCAGAAGGTCAAATCTTAATCTACATGCAAGTGCTAAAGTTGTGACAACAATGTATATGGAGCAAACACAAAGTGATCTGTACGTGTTAGGGATTTATATCAGGCTAATATCATAAGACTGATATGAACTGATATGAAGACTTGATATGAACACTTCAGAAGGGACTCTGGTCTTCTGAATGTATGTACACCATAGTGCTTGTTGATATAAAGTCACATGAAATTAAAGTGCTTCTTTTTGAAGattaacattt
>XR_003402943.2
TTGGTGATCACTTCACTAGCAGATAACCTatcaaaagcaattttttttgctttaaataagGGGTGTAAGATGGTCCTGAACAACTATTCCCTCTGCTCTGACACATCATATCGAGCAAATGAAGACACTGAATTGAATTAGggttctacttggattCCTCTCTGGAAGGGAAGAGGACCTTTTGTTATAATGTTCCACTGAAAACTTTTATGTGTTTCTCCCAAAATGACAAACTGAAGAATCCTAAAGGGTGCAAGATGGAACGTTCTTCTTAAAGTGTAGTCTTGAATACTGTTCAGGTAGAAGACAAATTGATTAGTAGTGTAACTGGTCTATCATTTTGTGTGTCTATTGctgtatgatatgatataatgaTGTAATCATGTGtgatgcgttttttttttccttttttttctttttaatttcccTTCTCCTATATCCATGTAGTGTTTGGTTTCTTAAACATAGTGCATGCACTGGGGGACTTGGACCACTGGGGCAGAAGGTCAAATCTTAATCTACATGCAAGTGCTAAAGTTGTGACAACAATGTATATGGAGCAAACACAAAGTGATCTGTACGTGTTAGGGATTTATATCAGGCTAATATCATAAGACTGATATGAACTGATATGAAGACTTGATATGAACACTTCAGAAGGGACTCTGGTCTTCTGAATGTATGTACACCATAGTGCTTGTTGATATAAAGTCACATGAAATTAAAGTGCTTCTTTTTGAAGattaacattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402942.2 True 770 lncRNA 0.36 2 9837250 9838251
XR_003402943.2 False 752 lncRNA 0.36 2 9837250 9838412

Neighbor

gene id symbol gene type direction distance location
hoxb13a hoxb13,hoxb13a,hoxb13aa,LOC107687788,LOC107662424,LOC107585093,LOC107740673,LOC107582955 coding downstream 67332 9767867 ~ 9769918 (-)
hoxb9a hoxb9,hoxb9a,LOC107662432,LOC107717219,LOC107585091 coding downstream 95917 9737003 ~ 9741333 (-)
hoxb7a hoxb7 coding downstream 108396 9724361 ~ 9728854 (-)
hoxb6a hoxb6a,LOC108278545,LOC108413127,LOC107585042,LOC107582892,LOC107662387 coding downstream 119781 9715010 ~ 9717469 (-)
hoxb5a hoxb5a,LOC108278507,LOC108413114,LOC107717200,LOC107687777,LOC107662384 coding downstream 123508 9711139 ~ 9713742 (-)
nr1d1 nr1d1 coding upstream 58454 9896866 ~ 9904394 (-)
ppp1r9ba ppp1r9b,LOC108412948 coding upstream 149704 9988116 ~ 10033085 (-)
col1a1a col1a1,LOC108279263,LOC107585052,LOC107740634 coding upstream 203769 10042181 ~ 10061921 (-)
nags nags coding upstream 283974 10122386 ~ 10134023 (-)
mosmoa c17h16orf52,c16orf52.L,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 308436 10146848 ~ 10185101 (-)
G208473 NA non-coding downstream 89211 9746496 ~ 9748039 (-)
G208391 NA non-coding downstream 331500 9494623 ~ 9505750 (-)
LOC117598997 NA non-coding downstream 391146 9441986 ~ 9446104 (-)
G208189 NA non-coding downstream 734124 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 773743 9061580 ~ 9063507 (-)
G208613 msl1 non-coding upstream 76495 9914907 ~ 9917529 (-)
G208649 NA non-coding upstream 225565 10063977 ~ 10066356 (-)
G208758 NA non-coding upstream 348624 10187036 ~ 10187252 (-)
G208771 NA non-coding upstream 383298 10221710 ~ 10290885 (-)
G208951 NA non-coding upstream 503499 10341911 ~ 10342222 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 104684 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 362772 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 417666 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 633610 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 694379 9112966 ~ 9142871 (-)
tecpr1b LOC108276900 other upstream 612312 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 1803745 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 1861437 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 2459364 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 2495442 12333854 ~ 12339269 (-)

Expression


Co-expression Network