LOC113528476


Basic Information

Item Value
gene id LOC113528476
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 5952798 ~ 5953504 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402949.2
tgtaattttgcGTACACTCTTTTCATTCCCTAGCTACACAAGCTCCCACAAACTGTATCTGCTTGATTTGGTTGCTCTTCAGGAGCTCCTTGCTGGTTTGGTGGACAAAATTGGACATTATGCTCTGTACTGGATTGGTTTGACGGATGCTGAAAATGAGGATGTGTGGCTTTGGATAGATGGGACACctctaaataaacatctttcGTGGTGGAAATACACTCCAGATGACTATAAACAAAATGACCCACTAGGAGAAGACTGTGTGGTTTATTATGGTGGGAAATGGGCAGATGTGTCTTGTTTGACATTACAACCGAGGATCTGTGAAGTTTATTGAACTCATCAAACACCatttagctcttttttttaattaaatatgatttgTGCCACCTGCTACAGTCGTGCTGCAGCTTACCTGTGCTTTACTAAGCTTTTTTGTCCTTGGGACTTTTCCTACACTGGGCATGTGGTTCTATCACTTATTTGCTTTCAGAATGTGTTGAAGATTCCAATAAAATTCCTGTAAACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402949.2 True 534 lncRNA 0.40 2 5952798 5953504

Neighbor

gene id symbol gene type direction distance location
cdk21 LOC108274791 coding downstream 14367 5934040 ~ 5938431 (-)
svilc LOC108281065 coding downstream 20922 5897560 ~ 5931876 (-)
znf281a LOC108260862 coding downstream 175573 5757144 ~ 5777225 (-)
si:ch211-198m17.1 NA coding downstream 222775 5698087 ~ 5730023 (-)
mpp3a mpp3,LOC107720025 coding downstream 261526 5657837 ~ 5691272 (-)
nmt1a nmt1,LOC108432052,LOC102778525 coding upstream 9184 5962688 ~ 5978373 (-)
plcd3a plcd3,plcd3a,LOC108432051,LOC107581738,LOC107654535,LOC107591554 coding upstream 27696 5981200 ~ 6017987 (-)
arhgap23a LOC108276663 coding upstream 72775 6026279 ~ 6105884 (-)
nudt9 nudt9,LOC107590571 coding upstream 195851 6149355 ~ 6160172 (-)
atp2a1 atp2a1,LOC108411044,LOC107755578,LOC107567734,LOC107690283,LOC107590562 coding upstream 269966 6223470 ~ 6238688 (-)
G206210 NA non-coding downstream 225118 5721634 ~ 5727680 (-)
G206164 NA non-coding downstream 320879 5631715 ~ 5631919 (-)
LOC113528378 NA non-coding downstream 667893 5280730 ~ 5284905 (-)
G205628 NA non-coding downstream 895682 5056910 ~ 5057116 (-)
G205558 NA non-coding downstream 1124252 4828253 ~ 4828546 (-)
LOC113527891 NA non-coding upstream 233970 6187474 ~ 6189926 (-)
G206628 NA non-coding upstream 249808 6203312 ~ 6204196 (-)
G206649 NA non-coding upstream 320312 6273816 ~ 6346363 (-)
G206924 NA non-coding upstream 871392 6824896 ~ 6825760 (-)
G206923 NA non-coding upstream 872864 6826368 ~ 6828146 (-)
retsat LOC108257121,LOC108432054 other downstream 1801 5940862 ~ 5950997 (-)
G206282 NA other downstream 111321 5841137 ~ 5841477 (-)
G206236 NA other downstream 196065 5754767 ~ 5756733 (-)
G205633 rps11,LOC102786880,LOC107674708 other downstream 860876 5089336 ~ 5091922 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other downstream 1217896 4722417 ~ 4734902 (-)
LOC113528542 NA other upstream 229 5953733 ~ 5961050 (-)
G206604 NA other upstream 173406 6126910 ~ 6194996 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other upstream 692554 6646058 ~ 6726165 (-)
G207231 spsb3 other upstream 1365099 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 1472213 7425717 ~ 7431112 (-)

Expression


Co-expression Network