LOC113528504


Basic Information

Item Value
gene id LOC113528504
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 8209298 ~ 8209867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402951.2
CAGAAAATGGATCAGAAGTTTATCCTGTAGCCGCTCGTGCTCCAAATCAGCGGGAAGCCCGCGAACACAAACTGTATGTCCCATTTCCGCCATCTTCTGGACAACTGAGAGGAAGAATCTTCACAAAGTAGTCGGATATGCGCTAAAGTTGCAAACAGGAAGTTTGGCGTTCACTTATACCTTCGTGGCAAGATGAGCTAAATTATATTAGTAACCGGTTCCTGAGaaaagtgaaagctGTGGAAAAAGTGTCGTAGTGTTTTGGAGATTTAAAGAAATAGCCCCCACAACAGTACTGGAGGAACAAAGGCGTCAACAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402951.2 True 322 lncRNA 0.44 3 8209298 8209867

Neighbor

gene id symbol gene type direction distance location
vat1 vat1,LOC108413532,LOC107567018 coding upstream 8515 8163843 ~ 8200783 (+)
mrc2 mrc2 coding upstream 94713 8070714 ~ 8114585 (+)
tlk2 tlk2,LOC108413572,LOC107689079,LOC107567040,LOC107660745,LOC107552467 coding upstream 146703 8047426 ~ 8062595 (+)
mettl2a LOC108279476 coding upstream 166495 8031681 ~ 8042803 (+)
itgb3a LOC108279461,LOC108413591 coding upstream 181407 8010533 ~ 8027891 (+)
asb16 asb16 coding downstream 2162 8212029 ~ 8218351 (+)
tmub2 tmub2,LOC107708558,LOC107660620,LOC107566939,LOC107571926 coding downstream 9658 8219525 ~ 8226005 (+)
ngfra ngfr coding downstream 101149 8311016 ~ 8358151 (+)
LOC113528522 nxph3,LOC107660556,LOC105012985,LOC107754835,LOC107590800,LOC107710880,LOC107568907 coding downstream 244136 8454003 ~ 8484944 (+)
LOC113528198 NA coding downstream 633330 8843197 ~ 8873465 (+)
G207616 NA non-coding upstream 7706 8201292 ~ 8201592 (+)
G207610 NA non-coding upstream 51117 8157944 ~ 8158181 (+)
LOC117599010 NA non-coding upstream 66061 8120452 ~ 8143237 (+)
G207570 NA non-coding upstream 173925 8033925 ~ 8035373 (+)
G207483 NA non-coding upstream 353409 7855431 ~ 7855889 (+)
G207612 NA non-coding downstream 26866 8236733 ~ 8250981 (+)
G207717 NA non-coding downstream 77590 8287457 ~ 8289905 (+)
G207845 NA non-coding downstream 275769 8485636 ~ 8485935 (+)
LOC113528543 NA non-coding downstream 289887 8499754 ~ 8534003 (+)
G207927 NA non-coding downstream 482854 8692721 ~ 8717277 (+)
trnas-cga_1 NA other upstream 200887 8008186 ~ 8008411 (+)
G207480 LOC107834952 other upstream 355789 7853191 ~ 7853509 (+)
spsb3a spsb3,spsb3a,LOC107689049 other upstream 887333 7309207 ~ 7321965 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 1077331 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 1107083 7084441 ~ 7102215 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 740599 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 851696 9061563 ~ 9063413 (+)
rapgefl1 rapgefl1,LOC107717207,LOC107662398,LOC107740631,LOC107667751,LOC107585050,LOC106600822 other downstream 1734439 9944306 ~ 9987773 (+)
G208781 cacng4b,LOC108259704,LOC106606650,LOC107565862,LOC107691234,LOC106601773,LOC107724746,LOC107713946 other downstream 2139535 10349402 ~ 10781459 (+)
cdc42ep4a LOC108256079,LOC108432235,LOC103033379 other downstream 3070213 11280080 ~ 11388020 (+)

Expression


Co-expression Network