LOC113528647


Basic Information

Item Value
gene id LOC113528647
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11536560 ~ 11536678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402963.1
GCTTACGGCCATACCACCCTGAGAACGCCCGATCTCGTCCGATCTCGGAAGCTAAGCAGggtcgggcctggttagtacttggatgggagaccgcctgggaataccaggtgctgtaagct

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402963.1 True 119 rRNA 0.59 1 11536560 11536678

Neighbor

gene id symbol gene type direction distance location
slc16a5b LOC108274816 coding downstream 7118 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 18473 11509731 ~ 11518087 (-)
LOC113528102 rnf222 coding downstream 41073 11493275 ~ 11495487 (-)
hs3st3b1a si:ch211-216b21.2,hs3st3a1,LOC108260710,LOC107704231,LOC107684140,LOC107753271 coding downstream 98225 11426285 ~ 11438335 (-)
LOC113528663 NA coding downstream 103932 11432510 ~ 11432628 (-)
LOC113528658 NA coding upstream 29332 11566010 ~ 11566128 (-)
spc24 spc24 coding upstream 208813 11745491 ~ 11751424 (-)
kri1 kri1 coding upstream 216365 11753043 ~ 11763823 (-)
LOC113528652 NA coding upstream 219147 11755825 ~ 11755923 (-)
ldlra ldlr coding upstream 236401 11773079 ~ 11785047 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 863 11531576 ~ 11535697 (-)
G209541 LOC108256081 non-coding downstream 59764 11403078 ~ 11476796 (-)
G209538 NA non-coding downstream 135137 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 147329 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 315182 11218659 ~ 11221378 (-)
G209618 NA non-coding upstream 63794 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 73956 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 82862 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 127807 11664485 ~ 11665129 (-)
LOC117598828 NA non-coding upstream 308895 11845573 ~ 11879417 (-)
tecpr1b LOC108276900 other downstream 1066042 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1803994 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2062082 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2116976 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2332920 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 105479 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 163171 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 761098 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 797176 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1009655 12546333 ~ 12559213 (-)

Expression


Co-expression Network