LOC113528652


Basic Information

Item Value
gene id LOC113528652
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11755825 ~ 11755923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402968.1
TTGCACTGATGAGCTGTGATTGTGTTCTGACCTGGTATTGCTGTTCCTCCGGGAATAACTCTGACCAGGGCCTGAGGACTTAATCTTCTCTCTGAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402968.1 True 99 ncRNA 0.49 1 11755825 11755923

Neighbor

gene id symbol gene type direction distance location
spc24 spc24 coding downstream 4401 11745491 ~ 11751424 (-)
LOC113528658 NA coding downstream 189697 11566010 ~ 11566128 (-)
LOC113528647 NA coding downstream 219147 11536560 ~ 11536678 (-)
slc16a5b LOC108274816 coding downstream 226383 11520766 ~ 11529442 (-)
LOC113528402 LOC108258929 coding downstream 237738 11509731 ~ 11518087 (-)
ldlra ldlr coding upstream 17156 11773079 ~ 11785047 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding upstream 34652 11790575 ~ 11809016 (-)
il12rb2l NA coding upstream 54284 11810207 ~ 11825779 (-)
rln3a LOC108258150 coding upstream 70362 11826285 ~ 11828107 (-)
tmem104 tmem104,LOC107568246 coding upstream 207772 11963695 ~ 12012976 (-)
G209646 hmgxb4 non-coding downstream 90696 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 129757 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 138637 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 154581 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 220128 11531576 ~ 11535697 (-)
LOC117598828 NA non-coding upstream 89650 11845573 ~ 11879417 (-)
G209829 NA non-coding upstream 312331 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 312890 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 314373 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 320749 12076672 ~ 12077073 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 54653 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 107828 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1285307 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2023259 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2281347 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 541853 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 577931 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 790410 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1634693 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1639543 13395466 ~ 13399225 (-)

Expression


Co-expression Network