LOC113528654


Basic Information

Item Value
gene id LOC113528654
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15471777 ~ 15471912 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402969.1
TGGCACTGTCTTTGAACCTTTGAAGCCCTCCTCATGGCTCCATAGGCCAAGCAacagtgcaaaattaaaggCTTGTTATAACTGGGGCTTCTTGGCATCATATCCCAAGTTGCTCTTTTAAAAGCAAACCACAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402969.1 True 136 ncRNA 0.44 1 15471777 15471912

Neighbor

gene id symbol gene type direction distance location
si:ch73-374l24.1 si:ch73-374l24.1,LOC108259727,LOC108437159,LOC102304961,LOC107556610,LOC102791879 coding downstream 268593 15053544 ~ 15203184 (-)
cacng5b cacng5b,LOC108275568,LOC108437158,LOC107729207,LOC107556612,LOC107664435,LOC107698772 coding downstream 420134 15038370 ~ 15051643 (-)
LOC113528182 LOC108274645,LOC108274429 coding downstream 499193 14955058 ~ 14972584 (-)
LOC113528557 LOC108260380 coding downstream 524243 14941903 ~ 14947534 (-)
amn amn coding downstream 537616 14931916 ~ 14934161 (-)
LOC113528505 LOC108277132 coding upstream 106542 15578454 ~ 15581065 (-)
LOC113528397 stk31 coding upstream 110692 15582604 ~ 15595204 (-)
LOC113528053 LOC108277091,LOC108277128,LOC108277120,LOC108275034 coding upstream 135532 15607444 ~ 15617384 (-)
LOC113528022 rasd1,LOC108274801,LOC103040487,LOC108437878,LOC103468867,LOC106942351,LOC108241306,LOC103140985,LOC106518663 coding upstream 753739 16225651 ~ 16227442 (-)
sox8a sox8 coding upstream 854973 16326885 ~ 16330539 (-)
G211688 NA non-coding downstream 127046 15344509 ~ 15344731 (-)
G211363 NA non-coding downstream 434882 15035169 ~ 15036895 (-)
G211349 NA non-coding downstream 470449 15000945 ~ 15001328 (-)
G211346 NA non-coding downstream 536656 14934669 ~ 14935121 (-)
G211274 NA non-coding downstream 624321 14847252 ~ 14847456 (-)
LOC113528255 NA non-coding upstream 32 15471944 ~ 15472817 (-)
G211751 NA non-coding upstream 37785 15509697 ~ 15510283 (-)
G211773 NA non-coding upstream 75643 15547555 ~ 15547759 (-)
G211774 NA non-coding upstream 75915 15547827 ~ 15548062 (-)
G211800 rnf213 non-coding upstream 151795 15623707 ~ 15624357 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other downstream 485665 14978619 ~ 14986112 (-)
LOC113528445 LOC108274755 other downstream 781645 14678750 ~ 14690132 (-)
G211151 usp36 other downstream 950802 14520277 ~ 14520975 (-)
pecam1 LOC108279165 other downstream 1442136 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 1465265 14004169 ~ 14006512 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 679163 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 1100633 16572545 ~ 16598688 (-)
LOC113527915 LOC108431896,LOC108275040,LOC107695676,LOC107553625,LOC107601566,LOC101883507,LOC103358698 other upstream 1289320 16761232 ~ 16765341 (-)
LOC113528519 NA other upstream 1820861 17292773 ~ 17319719 (-)
G212700 NA other upstream 1914299 17386211 ~ 17425901 (-)

Expression


Co-expression Network