LOC113528655


Basic Information

Item Value
gene id LOC113528655
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3155296 ~ 3155430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402970.1
GTGCACTGTTCGTAACCTGTTTCAGTACTGCAGTCTGAAATCCGGGTTCCATTCCAGTGCTATAGGAACGTTCGGTAAGGCAGGGGAGTGCGGCTCGTCTGTGCATAACTCCCTGTTCACTAACTGACGACAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402970.1 True 135 ncRNA 0.52 1 3155296 3155430

Neighbor

gene id symbol gene type direction distance location
rpl23 RPL23,rpl23,rl23 coding downstream 82469 3066745 ~ 3072827 (-)
ccdc103 ccdc103 coding downstream 91485 3059168 ~ 3063811 (-)
LOC113528219 LOC108276187 coding downstream 96340 3057417 ~ 3058956 (-)
abi3a LOC108276098,LOC108434940 coding downstream 100329 3039981 ~ 3054967 (-)
LOC117598766 NA coding downstream 321442 2789176 ~ 2833854 (-)
LOC113528657 NA coding upstream 1187 3156617 ~ 3156709 (-)
rusf1 c2h16orf58,cunh16orf58,LOC102793205,LOC107577286 coding upstream 27555 3182985 ~ 3191017 (-)
prr14 NA coding upstream 44717 3200147 ~ 3213935 (-)
cd2bp2 cd2bp2,LOC107554127 coding upstream 59056 3214486 ~ 3218927 (-)
LOC113528532 tbc1d10b,LOC107737756,LOC107554125,LOC107582992 coding upstream 92271 3247701 ~ 3271970 (-)
G204524 NA non-coding downstream 122068 3028815 ~ 3033228 (-)
G204518 NA non-coding downstream 184427 2965883 ~ 2970869 (-)
LOC117598767 NA non-coding downstream 554944 2599709 ~ 2600352 (-)
G204317 NA non-coding downstream 613771 2541126 ~ 2541525 (-)
LOC117598837 NA non-coding downstream 653101 2496612 ~ 2502195 (-)
G204664 NA non-coding upstream 15832 3171262 ~ 3174277 (-)
G205038 NA non-coding upstream 445572 3601002 ~ 3602239 (-)
G205030 NA non-coding upstream 461741 3617171 ~ 3620119 (-)
G205040 dus1l,LOC102781131 non-coding upstream 475264 3630694 ~ 3631383 (-)
G205063 NA non-coding upstream 548853 3704283 ~ 3738959 (-)
si:dkey-283b1.7 LOC108276203,LOC107737768,LOC104929916,LOC106607185 other downstream 77278 3073977 ~ 3078018 (-)
si:dkey-283b1.6 NA other downstream 115644 3034246 ~ 3039652 (-)
LOC113528062 LOC108276032,LOC108276106 other downstream 617185 2433149 ~ 2538111 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other downstream 810384 2331676 ~ 2344912 (-)
ifi35 ifi35 other downstream 959756 2112445 ~ 2195540 (-)
nde1 nde1 other upstream 227401 3382831 ~ 3413767 (-)
kcnc3a kcnc3a,LOC108259249,LOC107729449,LOC108427388,LOC107693499,LOC107548332,LOC105891716 other upstream 613425 3768855 ~ 3865849 (-)
G205173 gfap,LOC103392664 other upstream 885051 4040481 ~ 4044575 (-)
dcaf7 dcaf7,LOC100702343,LOC105030232 other upstream 937483 4092913 ~ 4117643 (-)
mlx mlx,LOC107721525,LOC107601295,LOC107720011,LOC107590371,LOC107654516,LOC107688133,LOC106601136 other upstream 1566987 4722417 ~ 4734902 (-)

Expression


Co-expression Network