LOC113528663


Basic Information

Item Value
gene id LOC113528663
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11432510 ~ 11432628 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402978.2
TTTTTCGGCCATACCACCCTGAGAACGCCCGATCTTGTCTGATCTCGGAAGCTAAGCAGGGTTGGGCCTGGCTAGTACTTGGATGGGAGgccgcctgggaataccaggtgctgtaagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402978.2 True 119 rRNA 0.56 1 11432510 11432628

Neighbor

gene id symbol gene type direction distance location
ttyh2l LOC108277373,LOC108432236 coding downstream 240995 11154915 ~ 11191515 (-)
LOC113528317 chmp6,LOC108277388,LOC108432238,LOC106606311,LOC105939499 coding downstream 280347 11147394 ~ 11152163 (-)
baiap2a LOC108277336,LOC108432239,LOC107711237,LOC107672452,LOC107670476 coding downstream 286678 11074517 ~ 11145832 (-)
LOC113528015 NA coding downstream 406706 11023672 ~ 11025804 (-)
rcvrna LOC108260894,LOC108412638,LOC107583783,LOC107725264,LOC107690016,LOC107555668,LOC107755173 coding downstream 420960 11009287 ~ 11011550 (-)
LOC113528102 rnf222 coding upstream 60647 11493275 ~ 11495487 (-)
LOC113528402 LOC108258929 coding upstream 77103 11509731 ~ 11518087 (-)
slc16a5b LOC108274816 coding upstream 88138 11520766 ~ 11529442 (-)
LOC113528647 NA coding upstream 103932 11536560 ~ 11536678 (-)
LOC113528658 NA coding upstream 133382 11566010 ~ 11566128 (-)
G209538 NA non-coding downstream 31087 11400722 ~ 11401423 (-)
G209529 NA non-coding downstream 43279 11388960 ~ 11389231 (-)
LOC113528410 NA non-coding downstream 211132 11218659 ~ 11221378 (-)
G209189 NA non-coding downstream 287526 11089013 ~ 11144984 (-)
G208998 NA non-coding downstream 798360 10633535 ~ 10634150 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding upstream 98948 11531576 ~ 11535697 (-)
G209618 NA non-coding upstream 167844 11600472 ~ 11601244 (-)
G209624 NA non-coding upstream 178006 11610634 ~ 11617188 (-)
LOC113527962 NA non-coding upstream 186912 11619540 ~ 11626068 (-)
G209646 hmgxb4 non-coding upstream 231857 11664485 ~ 11665129 (-)
tecpr1b LOC108276900 other downstream 961992 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 1699944 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 1958032 9464331 ~ 9474478 (-)
prr15la LOC108273894,LOC108412372 other downstream 2012926 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 2228870 9196496 ~ 9203640 (-)
hmox1a hmox1,LOC108432221 other upstream 209529 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 267221 11699849 ~ 11701172 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 865148 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 901226 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 1113705 12546333 ~ 12559213 (-)

Expression


Co-expression Network