LOC117598762


Basic Information

Item Value
gene id LOC117598762
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1061190 ~ 1078426 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579335.1
GAGTTCAGAGGCCTGCTCCTGCGCTGTCCTTCAGAACGTTCCCTCAGCCCTGTTTTCTTCAGGATGATCAGGATTAAACAGATTATCTGGAttaattacagttttaaagTTTGTGCTCTTGTCCTACGAAGAGAAAAACAAGCTCTCTAGTGTGAGTCATGAGTCATGTTtgtgaggaaggaaggaaatattTCACATCAAGTGTGAAGAAATCTTcttgaagagagagaaaaaacagagagaggctggtgaaggaacgacggattatagctgctataatACCTGAGTGATGATGGTGGCTGCTGTTGCAGGACTGAATGTCTGGTCTGGcctgatggaggaggaggaggaggaggaggaggaggaggaagaggaggaggatgaggaggaggataaagaggagaggaagaggtgGACATGGTGGTCAGGTTACTTGGTACCCAATGGCGTTGTAGAAGGCAGGGCTTTAATGGAGGGAAGGCACAGGAGTCTCAGGATTATTTAAAGGGCACACAGACACCACAACAGACCATTAGTGCTGTTCCTCAAGTTAGTCTGCTtacctgtctgtccatccatccatc

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579335.1 True 584 lncRNA 0.47 3 1061190 1078426

Neighbor

gene id symbol gene type direction distance location
LOC113528077 NA coding upstream 18740 1037151 ~ 1042450 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding upstream 26975 1021926 ~ 1034215 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding upstream 46445 1000089 ~ 1014745 (+)
smg1 smg1,LOC107729485 coding upstream 63505 941020 ~ 997685 (+)
syt17 syt17,LOC107729446,LOC107658452,LOC107732856,LOC107564007 coding upstream 149280 889261 ~ 911910 (+)
LOC113528076 NA coding downstream 13 1078439 ~ 1110138 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding downstream 175101 1253527 ~ 1266121 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding downstream 245674 1324100 ~ 1345037 (+)
shank1 shank1,LOC108427331,LOC107732841 coding downstream 323382 1401808 ~ 1494018 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding downstream 426452 1504878 ~ 1531986 (+)
G203327 NA non-coding upstream 669 1058679 ~ 1060521 (+)
G203357 NA non-coding upstream 176824 817391 ~ 884366 (+)
G203339 NA non-coding upstream 317450 741832 ~ 743740 (+)
G203321 NA non-coding upstream 322463 738339 ~ 738727 (+)
G203328 NA non-coding upstream 374560 679778 ~ 686630 (+)
G203385 NA non-coding downstream 32103 1110529 ~ 1110847 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 230971 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 283957 1362383 ~ 1441015 (+)
G203660 NA non-coding downstream 368563 1446989 ~ 1500793 (+)
G203662 NA non-coding downstream 443800 1522226 ~ 1533045 (+)
armc5 armc5 other upstream 4856 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 254845 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 286940 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 328300 726729 ~ 732890 (+)
rnf25 rnf25 other upstream 344171 707738 ~ 717019 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other downstream 142068 1220494 ~ 1237202 (+)
kmt5c LOC108280634 other downstream 274903 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 483098 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 804626 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 838779 1917205 ~ 1987915 (+)

Expression


Co-expression Network