LOC117598763


Basic Information

Item Value
gene id LOC117598763
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 551404 ~ 566798 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579336.1
cacgaagttCACAGCTGTGTTCTCATGTCACTGTTTGATAATTTTCACAAAAAAGAGAACTTCCTCCGTGTGAAATATGGCTCTGTAGCTCGTAGCTTCTTCCCTGATCGAGGTCACTGGTGATGTGTTTCATTTTGATGGTCTGGTTTTGGTCGTTGTTCTGAGTCTCACTGAAGTCTGGTCCAGTACTGACCCAAGCTCGGGTCCTGATCTCCAGCCTGAACCCCGACCGGCCCTGAGAGCGACACGCTGGGAAGAAGACTCCAGCCCAGGAAGAAGAATCCAGTTCAGGAACAATAAAGATACATGTGACTCTCAGAGTCTCAGCGAgcaaatttatgg

Function

GO: NA

KEGG:

id description
ko00780 Biotin metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579336.1 True 342 lncRNA 0.48 4 551404 566798

Neighbor

gene id symbol gene type direction distance location
rcn3 rcn3 coding downstream 34454 507370 ~ 516950 (-)
si:ch211-195b15.7 LOC108280346 coding downstream 134829 405926 ~ 416575 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671,LOC107730737 coding downstream 258792 286041 ~ 292612 (-)
si:dkey-16p21.7 si:dkey-16p21.7,LOC108427376,LOC107658484,LOC107548343,LOC108274928,LOC108441159,LOC107598587,LOC107557374 coding downstream 300832 203871 ~ 250572 (-)
cpt1cb NA coding downstream 351012 144168 ~ 200392 (-)
LOC113525013 NA coding upstream 44392 611190 ~ 614186 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding upstream 55547 622345 ~ 630711 (-)
si:ch73-248e21.7 NA coding upstream 68886 635684 ~ 639207 (-)
si:ch73-248e21.5 NA coding upstream 75711 642509 ~ 644586 (-)
clec19a clec19a,LOC107658453,LOC107583104 coding upstream 353209 920007 ~ 931906 (-)
G203271 NA non-coding downstream 1693 549463 ~ 549711 (-)
G203268 NA non-coding downstream 17821 533292 ~ 533583 (-)
G203261 NA non-coding downstream 45492 505316 ~ 505912 (-)
G203190 NA non-coding downstream 179931 348585 ~ 371473 (-)
G203157 NA non-coding downstream 192023 356233 ~ 359381 (-)
G203425 NA non-coding upstream 98740 665538 ~ 669489 (-)
G203471 NA non-coding upstream 126701 693499 ~ 693886 (-)
G203458 NA non-coding upstream 153291 720089 ~ 763924 (-)
G203456 NA non-coding upstream 162013 728811 ~ 738745 (-)
G203486 NA non-coding upstream 171071 737869 ~ 745841 (-)
G203254 NA other downstream 61673 486222 ~ 489731 (-)
G203154 NA other downstream 217760 331541 ~ 333644 (-)
G203170 NA other downstream 388820 162126 ~ 162584 (-)
pih1d1 pih1d1 other downstream 448291 80628 ~ 103113 (-)
aldh16a1 aldh16a1 other downstream 497129 26642 ~ 54275 (-)
LOC117598978 NA other upstream 172870 739668 ~ 750458 (-)
G203488 NA other upstream 174446 741244 ~ 750799 (-)
LOC117598979 NA other upstream 183265 750063 ~ 753822 (-)
G203544 NA other upstream 343319 910117 ~ 911228 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 380932 947730 ~ 1066820 (-)

Expression


Co-expression Network