LOC117598764


Basic Information

Item Value
gene id LOC117598764
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 939508 ~ 940343 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579337.1
aagaaaaacatctgcaataacaacaataataatagaaatGTCTGGAGATTAGTGCCTTCAAGTTCTGTACTTTTTCACGTGTTCTTGCACAAGATCCCTGaaggaagaagaacaagaagcaGGAAACGAAACAGAATAAGggaatcactaaacattttaattcaaaacatatttttaaactacaaAAAAAGCTAATAGGAAACGTTAAGCTAACTTTTCATCTCATCATACACCCGAGTGTCCCATTGTCCTGCTCTGGTTCTTCTCTGTAACCTTCATGCTGAAGGCTTGAGGGCTGTGAGTGACGTTTTCAGGTGAAAAATATTACGCAGATCAAACTGAAGCTGTTCAGCCAGTTTTAAAGAAATGATCAAGACGTCGattttcttccttcctcttgTACAGTTTGTTGAATTCCACTTTACATCCCTCTAGTTCTGAGCTCTTTATTAGTAGATCTGTGTTAAATCCTGCACCTTTACTGTGTTCATTAAATTTAAAGCCGTGTGTAAAagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579337.1 True 517 lncRNA 0.37 2 939508 940343

Neighbor

gene id symbol gene type direction distance location
clec19a clec19a,LOC107658453,LOC107583104 coding downstream 7602 920007 ~ 931906 (-)
si:ch73-248e21.5 NA coding downstream 294922 642509 ~ 644586 (-)
si:ch73-248e21.7 NA coding downstream 300301 635684 ~ 639207 (-)
tspan4b LOC108280533,LOC107729542,LOC107658498,LOC108427360 coding downstream 308797 622345 ~ 630711 (-)
LOC113525013 NA coding downstream 325322 611190 ~ 614186 (-)
LOC113528078 cox6a2,LOC108280912,LOC107564019,LOC103367329,LOC107583062,LOC107658449 coding upstream 116027 1056370 ~ 1061679 (-)
LOC113528610 LOC108280679 coding upstream 171166 1111509 ~ 1119731 (-)
LOC117598757 LOC108280700,LOC108280715,LOC108280689,LOC108280710,LOC108280734 coding upstream 180823 1121166 ~ 1126092 (-)
LOC113528091 LOC108280723 coding upstream 203602 1143945 ~ 1148157 (-)
LOC117598761 NA coding upstream 208252 1148595 ~ 1150039 (-)
G203545 NA non-coding downstream 25947 911956 ~ 913561 (-)
G203543 NA non-coding downstream 36176 903037 ~ 903332 (-)
G203513 NA non-coding downstream 55096 817570 ~ 884412 (-)
G203510 hsd3b7 non-coding downstream 89643 791957 ~ 849865 (-)
G203502 NA non-coding downstream 133667 777344 ~ 805841 (-)
G203564 smg1 non-coding upstream 14341 954684 ~ 956624 (-)
G203577 smg1 non-coding upstream 40029 980372 ~ 981015 (-)
G203559 LOC108280785 non-coding upstream 101148 1041491 ~ 1043647 (-)
G203609 NA non-coding upstream 170744 1111087 ~ 1111312 (-)
G203630 NA non-coding upstream 297821 1238164 ~ 1241189 (-)
G203544 NA other downstream 28280 910117 ~ 911228 (-)
LOC117598979 NA other downstream 185686 750063 ~ 753822 (-)
G203488 NA other downstream 188709 741244 ~ 750799 (-)
LOC117598978 NA other downstream 189050 739668 ~ 750458 (-)
G203254 NA other downstream 449777 486222 ~ 489731 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other upstream 7387 947730 ~ 1066820 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other upstream 186341 1126684 ~ 1130550 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other upstream 325319 1265662 ~ 1345171 (-)
LOC113527889 LOC108278777 other upstream 1050830 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 1125545 2065888 ~ 2077477 (-)

Expression


Co-expression Network