LOC117598769


Basic Information

Item Value
gene id LOC117598769
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 24341688 ~ 24363384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579339.1
CAATTTTGCAACGGCCATTTTTAAAACGCGTCAGCAAAAGTGCGCGAGAATGCTGCTAGCAGATTAGGTGCTAGCTGTTTAACTCTATGCTTTATTAGCTCTTAATGTTAGCATTTGTTCACTGCCACCTCTAATTCTTCCTGTATATACATCTTTTAATCacactcattttaattttatatttgtaggTTAATCATTTAACATTATAGCTTTGGTATTAGTGACTAAATTGTGTTTTAAAGCTAATTGTTGCTAGTGCAGAGCTAAATTGTTCAGTGCTAGCTGCTGTGCTctgtgagaggaataaaactcctGTAGTGCTGTgaggaaaatatttaaagaagGGCTGGCTTGTCGCAGAAACCATAaagagtaaactcctctgtcctgaagatgtggaaaacctgaagttacagctttacctccattacaaagcactgacactggagactccttctcgACTTTATCAATGAAGTCCAGCACCGTCCCTGTAGTCTGTACTTCTTACGTCTGTTCTTGCCACATCTTCAAgAGCAGCGCCTGGAGAAATGGCCACCACAGAAGATTGATGTGCTGTCGGAATTGAGTTCAGTTTCTTTATTTCAAACAACGAGGGGTAGAAAtatcccatccatccattttctgtaccgcttatcctacacagcaTCGCAGGGCgcctggagcctgtcccggggaactcggggcacaacgCGGGGGACAATCACTCACTAGAGACAATTTaaagatgccaatcagcctacaacgcgtATCTTTGGACTGGGCAAGGAAACCGgaatacccagaggaaacccctgatgcacagggagaacatgcaaactccacgtgcacacagggcggaggcaggaatcgaacccccaaccccagaggcgCGAGGCATGAACGGTGTGACATCAAATGCTGTATAATGCCGAGGCATCagttaaagtgtaaaattatTCCGTTagaaaatattctaaaatatgttttaaaaatagcttTACATCTCTCAGATTTTGATAGTTCTTCGAAATATTTTCCTCCTGTTCTGTTTGCTCTGTTAAAATGAATGCAGTGGCAAATTGGACTTATATTTAAATAGAActcaaaactgtatttttac
>XR_004579340.1
CAATTTTGCAACGGCCATTTTTAAAACGCGTCAGCAAAAGTGCGCGAGAATGCTGCTAGCAGATTAGGTGCTAGCTGTTTAACTCTATGCTTTATTAGCTCTTAATGTTAGCATTTGTTCACTGCCACCTCTAATTCTTCCTGTATATACATCTTTTAATCacactcattttaattttatatttgtaggTTAATCATTTAACATTATAGCTTTGGTATTAGTGACTAAATTGTGTTTTAAAGCTAATTGTTGCTAGTGCAGAGCTAAATTGTTCAGTGCTAGCTGCTGTGCTctgtgagaggaataaaactcctGTAGTGCTGTgaggaaaatatttaaagaagGGCTGGCTTGTCGCAGAAACCATAaagagtaaactcctctgtcctgaagatgtggaaaacctgaagttacagctttacctccattacaaagcactgacactggagactccttctcgACTTTATCAATGAAGTCCAGCACCGTCCCTGTAGTCTGTACTTCTTACGTCTGTTCTTGCCACATCTTCAAATTCGGATCATGTGAAGTGTGTATCTCCTGCTACAATGACCTGCAACGTTCTTCAGCTTCTCCGGGTCCCACACTTGAACCTTGAGGGACGCCGCTGCAGCTCTAGATTTTCTGAATCACTCACGCACTCCATTACTGTTCATCTCCACTCAGTGGAGTGCTTGCCTGTGTTTATTTGCTGAAACTGAAGTGGGCTTCAGCGCTCTGCCATTTTTACACTGGGGACCAAAGCCATGAAATGATATTTGGGCAGGTGctcaaatttgaaaaaaaaaaaaaggagggaaaatgGACCAAGATTTTTAGTGAAATCACAGTCTGATCACAGTCCTGATCCATCTCACTGGTTTAATAACGTCACCTTCAAAGCAGCTTCCTACTTTCCACCTTAAAGTCGACACACAATCACAATGGatgttagtttttaaaaatgcacaggAAGAGTCAGTGTCACAAAGCGGCAGAATTCACCCCggatggaacaccagtccattcacacactcaatcacacctaGGGTCAATTTAACACAGCCAAGCCATATAACCTGCATGGttttggactgagggaggaaagcagagaacccagaggaaagcagagaacccagaggaagcccacacagacatgaagaGAACATCAGTCACTTGTCAGAAACAgcaactcaagctcaggatcaatcCCCAGACCCTGAAGCTCTGCAACTACAACGTTATccactacaccactacaatcCTGCcctgattcatttattaaaaaaaaagaagaaaatcttGCACAGAACCTCCTGTTTAATGATCTTAAGCATATCCTATAGGAATAGAAAATCCAAAGTCTGCTTAAAAAAGCTTAAAACACACTCCTGTTTCTTGTTCTTACTTTGTCCTACTAGAGACACCATGTTGAAATGACGTCTCCTTACCATTCTGAGAATTACTCAGAAAAGATGTTCATTTTTCCAGAAACTTGGTTATGAACATAACATATAGCATACAAGCCATAGCTGTTCCTAGTTAGCTAGAGTATGCATATGTtcacactaaaacactaaaacacaagaacaataatcagtgacagagtggtgtgatgcagcccaaccCCCGAAGTCaattactttccaataacacacacatatgtaacGATATGAGATTATTCCAGGACTTTGGAGAAAAGGCTCCTTAGGCAGAActataaacacatgaaattCTTGCACTGTGTGAAACAAGGCCAGTTTCTCTGCTTGagcacatttttattctgtgcAAAATGATCTTTATGCACCAAATTTAATTAGTAAATATTAAGCAAACGATGAGCGTTGGTCATTTCAACACCCAGCACAAAGAGGAATGCGTTTTCATCTCAGCTTTCTGATGATCGCCGAAGGATCATGAGACCAGCACCGTGGCAACAGGGTGTTTTATTAgcatgcaatattttataacacTTCTCCTGTT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579339.1 False 1120 lncRNA 0.42 3 24341688 24344903
XR_004579340.1 True 1983 lncRNA 0.41 3 24341688 24363384

Neighbor

gene id symbol gene type direction distance location
gsg1l gsg1l,LOC108275613,LOC108436662,LOC103031039,LOC107738642,LOC107690243,LOC106938975 coding upstream 470889 23846609 ~ 23870799 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding upstream 528053 23810299 ~ 23813635 (+)
c13h16orf89 c2h16orf89 coding upstream 550989 23784636 ~ 23790699 (+)
eef2kmt eef2kmt coding upstream 563682 23774380 ~ 23778006 (+)
noa1 noa1 coding upstream 568714 23767574 ~ 23772974 (+)
mettl22 mettl22 coding downstream 2362 24365746 ~ 24383894 (+)
abat abat,LOC107690246,LOC107738621,LOC106592407 coding downstream 22353 24385737 ~ 24418546 (+)
c13h16orf72 c2h16orf72,cunh16orf72,LOC105900007,LOC103025273,LOC107590581,LOC107685917,LOC107738628,LOC103038624 coding downstream 205849 24569233 ~ 24575461 (+)
atf7ip2 atf7ip2 coding downstream 447696 24811080 ~ 24829473 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 coding downstream 504016 24867400 ~ 24896195 (+)
LOC117598845 NA non-coding upstream 590091 23748207 ~ 23751597 (+)
G215824 NA non-coding upstream 719079 23622372 ~ 23622609 (+)
LOC117599008 NA non-coding upstream 748040 23591868 ~ 23593648 (+)
G215685 NA non-coding upstream 952335 23388418 ~ 23389353 (+)
G215667 NA non-coding upstream 974893 23366281 ~ 23366795 (+)
G216174 NA non-coding downstream 60382 24423766 ~ 24444172 (+)
G216171 NA non-coding downstream 81689 24445073 ~ 24447468 (+)
G216185 NA non-coding downstream 96001 24459385 ~ 24462851 (+)
G216167 NA non-coding downstream 106675 24470059 ~ 24473172 (+)
G216230 NA non-coding downstream 177342 24540726 ~ 24588450 (+)
rbfox1 rbfox1,LOC107733849 other upstream 11688 24038908 ~ 24330000 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other upstream 421285 23894247 ~ 23920403 (+)
igfbp7 igfbp7 other upstream 593557 23742482 ~ 23748131 (+)
LOC113546919 LOC108278588 other upstream 600298 23731454 ~ 23741390 (+)
G215621 LOC108277208 other upstream 1171135 23137246 ~ 23170553 (+)
G216197 NA other downstream 93686 24457070 ~ 24458004 (+)
si:ch211-157c3.4 LOC108278842 other downstream 166295 24529679 ~ 24539117 (+)
G216515 grin2a,LOC107568390,LOC107685916,LOC107690256,LOC108413991 other downstream 433870 24797254 ~ 24797678 (+)
LOC113523791 nacc1,LOC103025552,LOC107577049 other downstream 1893987 26257371 ~ 26301906 (+)
ier2a LOC108261286 other downstream 1942062 26305446 ~ 26306768 (+)

Expression


Co-expression Network