LOC117598772


Basic Information

Item Value
gene id LOC117598772
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 12446461 ~ 12463878 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579344.1
CCTGGTCCTTCAGACATCAAGTCCCTGGCAATGATTAACCACAGAGGAACCAAACAGGACTTGGCTATGATCTGGGATGTTTTATTCACAGACATTTAAAACCATGATATTAGGCAATACAACATCAGAGCATTTCAAAATAGTTTGATAGGAAACAAACAGAGTAGAATAACTAcatgtttttagaaatgtaGGTGCTGGTTTCTAACAGTTGGCTATATATTTTTAGTATCACATTATATACAACATTTCGGCAGCTATTAATGAATTAGTGAGAAATAGCACCAGCAGCAATATAAGTATTGAAGAAAGGCTGAAACATGGCAACAGTGTGTCCTCAAGGCCATCACTTCTGAAGCCGTGTGGTGAAGACTTCGTGACTGACTGGCATCCTCTGATGTCAGCACAGAGCACAACTAATGCTGACATTAGTATGCATAGCAGCGGGGAGGTGATGTCGACGTGGGAACATTGCGGAGGATCATTTTTCTCTTAGCAGAGCCTTCCCAGAGCCATGGACTACCAGGGCAGATCTGTATCTAATCACCTAATAAGCATTGTAGCTCTTCCCTGGAAcgaagaggcccaaacatgttccagcatgacaaagtgcctgtgcacaaagccGAGCTccttgaagacatggtttgccaagtttggtgtggaagaacctgagtagcctgtacagagccctggcctcaaccccactgaacatctctGAACATCAACTTTGCATCAGACCTTCTTGCCAAAAATCAGTGcacgacctcactaatgctcttgtggctgaatgggcacaaagtcccacactccaaaatctggtggaaagcctttccagaagagtggaacctgttatagcagcaaaggggggaccgAAACCATATTAATGCctatggttttggaatggaatgttcaaagGTCAACCATCTACATACCTTTGGACTTGTagagtaactataaatggatacaaagtTTGACATGATGttgttttagtaataaaaaatgtaattgttggcaaattgttgtggcataagacaaataaacacttcaggaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579344.1 True 1055 lncRNA 0.42 3 12446461 12463878

Neighbor

gene id symbol gene type direction distance location
LOC113528448 tmem159 coding downstream 51883 12389706 ~ 12394578 (-)
si:ch211-139g16.8 NA coding downstream 65427 12375893 ~ 12381034 (-)
rps2 rps2,LOC107690003,LOC107758112 coding downstream 72196 12371533 ~ 12374265 (-)
LOC113528330 rpl3l coding downstream 82695 12356624 ~ 12363766 (-)
LOC113528334 hagh,LOC105892024,LOC106606699 coding downstream 159323 12280033 ~ 12287138 (-)
wfikkn2a wfikkn2,LOC103032076,LOC107690026,LOC107758109,LOC107555656,LOC107670669,LOC107583670 coding upstream 62462 12526340 ~ 12530301 (-)
ankrd40 ankrd40 coding upstream 73534 12537412 ~ 12543062 (-)
zgc:171844 LOC108260146,LOC108432048,LOC100703987,LOC106607059 coding upstream 99072 12562950 ~ 12583366 (-)
mfsd6l mfsd6l coding upstream 123797 12587675 ~ 12591505 (-)
pik3r6b LOC108260485 coding upstream 129699 12593577 ~ 12612926 (-)
G209984 NA non-coding downstream 112799 12333454 ~ 12333662 (-)
G209961 NA non-coding downstream 209269 12236974 ~ 12237192 (-)
G209951 NA non-coding downstream 272054 12173454 ~ 12174407 (-)
G209946 NA non-coding downstream 287349 12158070 ~ 12159112 (-)
G209868 NA non-coding downstream 310542 12135508 ~ 12135919 (-)
G210123 NA non-coding upstream 122553 12586431 ~ 12587089 (-)
G210351 kpna2,LOC108261381,LOC100304957,LOC108432045 non-coding upstream 403712 12867590 ~ 12868480 (-)
G210349 kpna2,LOC108261381,LOC108432045,LOC106607066 non-coding upstream 405374 12869252 ~ 12870186 (-)
G210350 NA non-coding upstream 458059 12921937 ~ 12923464 (-)
G210348 LOC108257112 non-coding upstream 462767 12926645 ~ 12928808 (-)
msrb1a msrb1 other downstream 107192 12333854 ~ 12339269 (-)
LOC113528332 hs3st6,LOC102795972 other downstream 130963 12297776 ~ 12315498 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 745289 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 798464 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1975943 10450724 ~ 10470518 (-)
tom1 LOC108260160 other upstream 82455 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 926738 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 931588 13395466 ~ 13399225 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other upstream 1377288 13841166 ~ 13871131 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other upstream 1529998 13993876 ~ 14001037 (-)

Expression


Co-expression Network