LOC117598819


Basic Information

Item Value
gene id LOC117598819
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15203522 ~ 15204658 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579350.1
TACCGTCCACTTCACTTCCAGTCTACAGGTAAACTACCGTCCACTTCACTTCCAGCCTACAGGTAAACTACCGTCCACTTCACTTCCAGCCTACAGGTAAACTACCGTCCACTTCACTTCCAGTCTACAGGTAAACTACCGTCCACTTCACTTCCAGCCTACAGGTAAAATACCCTCCCCTTCACTTCCAGTCTACAGGTAAACTACCATCCACTTCACTTCCAGCCTCCAGGTAAACTACCGTCCACTTCACTTCCAGTCTACAGGTAAACTACCGTCCACTTCACTTCCAGTCTACAGGTAAAATACCGTCCCCTTCACTTCCAGCCTACAGGTAAACTACCCTCCACTTCACTTCCAGTCTACAGGTAAAATACCCTCCACTTCACTTCCAGTCTACAGGTAAACTACCGTCCACTTCACTTCCAGCCTCCAGGTAAAATACCGTCCACTTCACTTCCAGTCTACAGGTAAAATACCCTCCCCTTCACTTCCAGTCTACAGGTAAAATACCATCCCCTTCACTTCCAGTCTACAGGTAAAATACCCTCCCCTTCACTTCCAGTCTACAGGTAAACTACCGTCCACTTCACTTCCAGCCTACAGGTAAAATACCCTCCCCTTCACTTCCAGTCTACAGGTAAACTACCATCCACTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579350.1 True 661 lncRNA 0.48 3 15203522 15204658

Neighbor

gene id symbol gene type direction distance location
cyth3b cyth3,LOC108258062,LOC108437157,LOC107556600,LOC101486233,LOC103143117,LOC107664323,LOC107571178 coding upstream 166475 15000870 ~ 15037047 (+)
stk19 stk19 coding upstream 224516 14974576 ~ 14979006 (+)
zgc:112148 tvp23b,LOC105899270,LOC108437154 coding upstream 262428 14935237 ~ 14941094 (+)
LOC113528525 LOC108260868 coding upstream 271516 14927553 ~ 14932006 (+)
ush1ga ush1g,ush1ga,LOC107556601,LOC107698769,LOC107568596,LOC107664446 coding upstream 282845 14912189 ~ 14920677 (+)
cep112 cep112 coding downstream 3448 15208106 ~ 15342947 (+)
axin2 LOC108255292,LOC108437161 coding downstream 138599 15343257 ~ 15372183 (+)
tex2 LOC108278257,LOC108437163 coding downstream 232733 15437391 ~ 15469406 (+)
LOC113528209 ern1,LOC107555087 coding downstream 268208 15472866 ~ 15501425 (+)
samd9l LOC108278244 coding downstream 305269 15509927 ~ 15520567 (+)
G211338 NA non-coding upstream 192871 15010142 ~ 15010651 (+)
G211287 NA non-coding upstream 303216 14899776 ~ 14900306 (+)
G211247 NA non-coding upstream 358960 14844422 ~ 14844562 (+)
LOC113527943 NA non-coding upstream 359150 14838290 ~ 14844372 (+)
G211208 NA non-coding upstream 488647 14714671 ~ 14714875 (+)
G211540 NA non-coding downstream 264891 15469549 ~ 15471704 (+)
G211543 NA non-coding downstream 281879 15486537 ~ 15488982 (+)
G211838 NA non-coding downstream 501091 15705749 ~ 15706001 (+)
G211856 NA non-coding downstream 635114 15839772 ~ 15840000 (+)
G212033 NA non-coding downstream 941721 16146379 ~ 16148542 (+)
LOC117598752 NA other upstream 212072 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 581734 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 1709580 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 1757836 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 2829150 12367566 ~ 12374372 (+)
G211913 NA other downstream 713559 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 935672 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1882626 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 2494015 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2979035 18183693 ~ 18342960 (+)

Expression


Co-expression Network