LOC117598826 (LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967)


Basic Information

Item Value
gene id LOC117598826
gene name LOC108277545,LOC108280981,LOC108280985,LOC108277574,LOC108280967
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21414462 ~ 21416513 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579359.1
ATCACTCACGACCAACATCTTTAGCAAGTACAGAGAGAGGACTGTTCTCTGGATAAAATGAGAATACAGGTCATCTTTGGAATCCtgtggattttcacacaagctGCCATGGGTTTGCTGTTTCAGGATCCTGTTGTCTGTAGATTTACTGAGAGTAATCAGTGTTATGTAGTTCTGGGACAACGACTGCACCTGCCAATGCCCCTGGAGGAAAAGTTAGAGCTAAAGATCACAGACAAGACATCTACCCCTCGTTTAATTATAAGATATAGAAAAACCCAAAGTAACCCACCAAAACCAAATCCCCCAAGATGGCAGTTtgttaatgataataaaactaTGATACTAACCAGTGCAGAGAGGAACGACTCTGGAACATACACTTTAGTCACCTTTGATGCAAAAGGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579359.1 True 409 lncRNA 0.41 2 21414462 21416513

Neighbor

gene id symbol gene type direction distance location
LOC113527856 NA coding upstream 11738 21390903 ~ 21402724 (+)
LOC113527892 NA coding upstream 27375 21381780 ~ 21387087 (+)
sec24b sec24b,LOC108434542,LOC107596339,LOC107731363 coding upstream 85708 21301643 ~ 21328754 (+)
LOC113527948 NA coding upstream 120668 21288480 ~ 21293794 (+)
f8 LOC108279904 coding upstream 187614 21206459 ~ 21226848 (+)
LOC117598820 LOC108280985,LOC108277545 coding downstream 37605 21454118 ~ 21480442 (+)
LOC113540583 NA coding downstream 125477 21541990 ~ 21546092 (+)
rest rest coding downstream 204118 21620631 ~ 21631906 (+)
LOC117598747 NA coding downstream 229339 21645852 ~ 21646623 (+)
LOC117598748 NA coding downstream 230723 21647236 ~ 21647803 (+)
G214798 NA non-coding upstream 46234 21368024 ~ 21368228 (+)
LOC117598756 NA non-coding upstream 55403 21356850 ~ 21359059 (+)
G214753 NA non-coding upstream 169677 21198542 ~ 21244785 (+)
G214731 NA non-coding upstream 228159 21185266 ~ 21186303 (+)
G214723 NA non-coding upstream 251158 21162900 ~ 21163304 (+)
G214802 NA non-coding downstream 10461 21426974 ~ 21448404 (+)
G214804 NA non-coding downstream 31480 21447993 ~ 21466726 (+)
G214807 NA non-coding downstream 58120 21474633 ~ 21474963 (+)
LOC117598827 LOC108280967,LOC108277545,LOC108277574 non-coding downstream 85624 21502137 ~ 21505786 (+)
G214747 LOC108280967 non-coding downstream 135036 21551549 ~ 21556401 (+)
hopx hopx other upstream 65376 21340416 ~ 21349086 (+)
nudt6 nudt6 other upstream 390375 21011774 ~ 21024087 (+)
LOC113528520 znf518b other upstream 1241110 20022509 ~ 20173352 (+)
G214015 lyar other upstream 1433082 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 1461176 19933824 ~ 19953286 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 65509 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 98060 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 229567 21646080 ~ 21649152 (+)
G215022 NA other downstream 246571 21663084 ~ 22000809 (+)
G215010 LOC108275153 other downstream 248045 21664558 ~ 21711769 (+)

Expression


Co-expression Network