LOC117598828


Basic Information

Item Value
gene id LOC117598828
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 11845573 ~ 11879417 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579362.1
gagagagacgttgctAAAGTTCGGTGCTGTGCCTCGAGATGCCCGCGATGTTGGAAAAGTGTACGACggagatttcagggaaaagaagaggcagaaactcGATGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAACAGTTGTTGGTCAGTGATGAGGAGCAGGTTCTCTGTGTTGCTGAAGAGCACTCTCTGGTCGGTTCGGGCGAGCTTAGCAGGCGGCTCCAGAGACTCCTCGCCAAGAGCGGCTCCGTCAGCAGGCAGAGCCAATTCCTGACACTCATCAtcactctcctcttcctcctcatcctcctcttctgacaaacacacacaaaggaatGGTTACAATCACAGACGTGACAGAGAAGAAGCTgCGAGGGAGCTGAAGGATGGCTGACCTGTAGAAGCTCCATCTGAGCAGAAAGAGTTTAGCAGCTTTGGGGAAGGCCGGGCTGGCCTGGTAGGGCTTTAGGACCTGGGAGACGACAC

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579362.1 True 496 lncRNA 0.53 3 11845573 11879417

Neighbor

gene id symbol gene type direction distance location
rln3a LOC108258150 coding downstream 17466 11826285 ~ 11828107 (-)
il12rb2l NA coding downstream 19794 11810207 ~ 11825779 (-)
smarca4a smarca4,smarca4a,LOC108278850,LOC107658703,LOC107758124 coding downstream 36557 11790575 ~ 11809016 (-)
ldlra ldlr coding downstream 60526 11773079 ~ 11785047 (-)
kri1 kri1 coding downstream 81750 11753043 ~ 11763823 (-)
tmem104 tmem104,LOC107568246 coding upstream 84278 11963695 ~ 12012976 (-)
tnpo2 tnpo2,LOC108432206 coding upstream 135784 12015201 ~ 12032758 (-)
LOC113528656 NA coding upstream 146085 12025502 ~ 12025572 (-)
LOC113528185 LOC108275528,LOC103031371 coding upstream 268079 12147496 ~ 12153883 (-)
slc5a11 slc5a11,LOC107670676 coding upstream 310655 12190072 ~ 12200474 (-)
G209646 hmgxb4 non-coding downstream 180444 11664485 ~ 11665129 (-)
LOC113527962 NA non-coding downstream 219505 11619540 ~ 11626068 (-)
G209624 NA non-coding downstream 228385 11610634 ~ 11617188 (-)
G209618 NA non-coding downstream 244329 11600472 ~ 11601244 (-)
G209553 atp5h,LOC103042933,LOC101487002,LOC107599347 non-coding downstream 309876 11531576 ~ 11535697 (-)
G209829 NA non-coding upstream 188837 12068254 ~ 12068622 (-)
G209830 NA non-coding upstream 189396 12068813 ~ 12069180 (-)
G209832 NA non-coding upstream 190879 12070296 ~ 12070602 (-)
G209839 NA non-coding upstream 197255 12076672 ~ 12077073 (-)
G209835 NA non-coding upstream 204319 12083736 ~ 12084702 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other downstream 144401 11699849 ~ 11701172 (-)
hmox1a hmox1,LOC108432221 other downstream 197576 11642157 ~ 11647997 (-)
tecpr1b LOC108276900 other downstream 1375055 10450724 ~ 10470518 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other downstream 2113007 9729851 ~ 9732566 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other downstream 2371095 9464331 ~ 9474478 (-)
LOC113528332 hs3st6,LOC102795972 other upstream 418359 12297776 ~ 12315498 (-)
msrb1a msrb1 other upstream 454437 12333854 ~ 12339269 (-)
tom1 LOC108260160 other upstream 666916 12546333 ~ 12559213 (-)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC103384163 other upstream 1511199 13390616 ~ 13395457 (-)
LOC117598755 NA other upstream 1516049 13395466 ~ 13399225 (-)

Expression


Co-expression Network