LOC117598836


Basic Information

Item Value
gene id LOC117598836
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 2523988 ~ 2524878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579376.1
TCCGTCTTCTCCTCCGAGAAGCGGAGATGGCGTAATAGAAATATCAACAACTCCGAGGCCAGTGAGGCCGCAAGTCGCAAGCGTGACACCCATCTTAAAAGTCTGTGACGCACCCCGGCGAGCGAAGAGACGGAGATTAGTCAGTAAGAGTCCGTCGCAGATTCAGTCGAATCACCCACGTGTTCACCCGCGTGTTCAACCAGGGAAGTGGGTCATGGATCTCAATGCGTGATTAAcgaGACTGAAGCGGAGACCGAATTGGATAACGGCCCAGAACCGAATCAGGAAGCAGAGCGATGTCGGAGAGAGCGCCAGAGTCCCACTGGGCCTCTGTTTAAGCGCAGGTTTCCTCAATGACGGTTTAATGccaacGTCTCTAACCAGGAAGCGAGACCTGAACGGGTCCGTCGGCTGAGAATAGCGCCACCTCTCCGCCAGCACCGTGACAGCAGAATCTTGCGGCTCGCCGAAATAACGAGCGATTTGATTCGCGACCTGATTCGCGACAACAGTGCCATGTGtgaaaaaggttttgtgtgaaaagtTTGAATGCATGTCCGTGTCGAGGTATATTTTGATGTTGTGAATTCATGTTTTTGAATGTATGTTAGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579376.1 True 614 lncRNA 0.52 4 2523988 2524878

Neighbor

gene id symbol gene type direction distance location
nbr1b LOC108276620,LOC108437991 coding upstream 265732 2239609 ~ 2258256 (+)
slc25a39 LOC108276595,LOC108434938 coding upstream 311577 2198749 ~ 2212411 (+)
rpl27 rpl27,LOC107551168,LOC106601555 coding upstream 328962 2187365 ~ 2195026 (+)
grna NA coding upstream 349377 2130528 ~ 2174611 (+)
LOC117598986 LOC108276106,LOC108276032 coding downstream 97292 2622170 ~ 2691714 (+)
hspb9 NA coding downstream 330518 2855396 ~ 2856253 (+)
LOC117598987 LOC108276032 coding downstream 383294 2908172 ~ 2917545 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding downstream 389380 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding downstream 393996 2918874 ~ 2936656 (+)
G203996 NA non-coding upstream 131489 2388984 ~ 2392499 (+)
G203967 NA non-coding upstream 263614 2258482 ~ 2260374 (+)
G203973 NA non-coding upstream 296824 2224549 ~ 2227164 (+)
G203965 NA non-coding upstream 325655 2198113 ~ 2198333 (+)
G203955 NA non-coding upstream 364705 2154436 ~ 2159283 (+)
G204316 NA non-coding downstream 16236 2541114 ~ 2541458 (+)
G204323 NA non-coding downstream 20111 2544989 ~ 2737286 (+)
G204330 NA non-coding downstream 94149 2619027 ~ 2627149 (+)
G204333 NA non-coding downstream 131698 2656576 ~ 2723809 (+)
G204362 NA non-coding downstream 245808 2770686 ~ 2771310 (+)
rundc1 rundc1 other upstream 337824 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 536073 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 634473 1883052 ~ 1889515 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 904014 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 1162528 1353329 ~ 1361460 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 342890 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 478730 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 667826 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 1009411 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 1441855 3966733 ~ 3986284 (+)

Expression


Co-expression Network