LOC117598839


Basic Information

Item Value
gene id LOC117598839
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1870124 ~ 1870785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579384.1
TTTATTTAACGATGGGCGGGGCTTCATTAGAGgttttatttaaGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTAAGGTGGTCAGGGT
>XR_004579385.1
TTTATTTAACGATGGGCGGGGCTTCATTAGAGgttttatttaaGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTAAGGTGGTCAGGGTGTTATCAGAGGTGGGTGGGGCTTTATTAGAGgcctttattttctctctctctctcacacacacacacacacacacacacacacacaca
>XR_004579386.1
TGTCAGTTTGACATGGGCGGGGCTTCATTAGAGgttttatttaaGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCAGTAGAGGTTTTGTTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTGAGATGGGCGGGGCTTCATTAGAGGTTTTATTTAAGGTGGTCAGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579384.1 False 319 lncRNA 0.46 3 1870212 1870685
XR_004579385.1 True 374 lncRNA 0.46 3 1870124 1870685
XR_004579386.1 False 320 lncRNA 0.47 3 1870212 1870785

Neighbor

gene id symbol gene type direction distance location
akt1s1 akt1s1,LOC107564011,LOC107680841 coding downstream 10415 1841989 ~ 1859709 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding downstream 58080 1767306 ~ 1812044 (-)
LOC113528659 NA coding downstream 370519 1499515 ~ 1499605 (-)
LOC113528660 NA coding downstream 370774 1499261 ~ 1499350 (-)
LOC113527946 LOC108280870,LOC103034911 coding downstream 553949 1309888 ~ 1316175 (-)
aoc2 LOC108276610 coding upstream 354826 2225611 ~ 2233295 (-)
LOC113528224 LOC108276032 coding upstream 398886 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 418632 2289417 ~ 2304449 (-)
LOC113528064 LOC108276106,LOC108276032 coding upstream 434491 2305276 ~ 2323646 (-)
LOC113528065 LOC108276106,LOC108261374,LOC108276032,LOC108276084 coding upstream 492339 2363124 ~ 2375676 (-)
G204107 NA non-coding downstream 2187 1867292 ~ 1867937 (-)
G204090 NA non-coding downstream 103255 1766651 ~ 1766869 (-)
G204087 NA non-coding downstream 119733 1750182 ~ 1750391 (-)
G204084 NA non-coding downstream 134404 1735518 ~ 1735720 (-)
G204080 NA non-coding downstream 138924 1731001 ~ 1731200 (-)
G204117 nucb1,LOC102787595,LOC101482526,LOC100690097,LOC108280797,LOC107551137,LOC107687629,LOC101169036 non-coding upstream 23284 1894069 ~ 1898760 (-)
G204145 NA non-coding upstream 70564 1941349 ~ 1941880 (-)
G204234 NA non-coding upstream 334993 2205778 ~ 2206121 (-)
G204187 NA non-coding upstream 340000 2210785 ~ 2212443 (-)
G204191 NA non-coding upstream 342332 2213117 ~ 2214598 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 524953 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 739574 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 803304 947730 ~ 1066820 (-)
G203544 NA other downstream 958896 910117 ~ 911228 (-)
LOC117598979 NA other downstream 1116302 750063 ~ 753822 (-)
LOC113527889 LOC108278777 other upstream 120388 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 195103 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 241660 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 460891 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 562364 2433149 ~ 2538111 (-)

Expression


Co-expression Network