LOC117598842


Basic Information

Item Value
gene id LOC117598842
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4923914 ~ 4925682 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579387.1
tctctctctctctgtctctgtctctgtctctctctctgtcctcttgtGAGATGGCTTCTCTCCAGCTGCTCTACACGGCTCTGCTCAGCACCGCCTGCACACCAGAGTGTgagctACAGACTCTGCACCAGGAGAAACCCTGGgctattccctctctctcctctccctctctccctctctcctctctccctgacacacacactcgctctgaTTCCATTGTGAAGGATGTGCAGCTTCCATGGAGCTTCGGCTCTTGGGATGATGTCTATACAGAGATGTGTGactgaggaagagagagagtcatGAGGGATCCATCCAGAAGCAGACCACCAAGgtctGATACAATGAAGGAGCTCCAAAATGGTAGTTCAGAGCCAGTCCTCAGGCAAATCAGCCAAATTGTGTTACTAATGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579387.1 True 415 lncRNA 0.52 3 4923914 4925682

Neighbor

gene id symbol gene type direction distance location
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding upstream 153418 4737041 ~ 4770496 (+)
ezh1 ezh1 coding upstream 374436 4527593 ~ 4549478 (+)
moto meioc coding upstream 697869 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 792439 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 819160 4057751 ~ 4104754 (+)
LOC113528572 NA coding downstream 45140 4970822 ~ 4974830 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 56344 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 132240 5057922 ~ 5078370 (+)
rps11 rps11,LOC107674708 coding downstream 163581 5089263 ~ 5091817 (+)
LOC113528651 NA coding downstream 164516 5090198 ~ 5090283 (+)
G205315 NA non-coding upstream 250885 4671760 ~ 4673029 (+)
G205306 NA non-coding upstream 360260 4563408 ~ 4563654 (+)
G205299 NA non-coding upstream 372049 4549561 ~ 4551865 (+)
G205303 NA non-coding upstream 385759 4537498 ~ 4538155 (+)
G205263 NA non-coding upstream 529656 4393925 ~ 4394258 (+)
G205454 NA non-coding downstream 154305 5079987 ~ 5081204 (+)
G206157 NA non-coding downstream 703776 5629458 ~ 5629659 (+)
G206212 NA non-coding downstream 809688 5735370 ~ 5735607 (+)
G206221 NA non-coding downstream 829170 5754852 ~ 5756939 (+)
LOC117599005 NA non-coding downstream 943180 5868862 ~ 5869806 (+)
psmc3ip psmc3ip other upstream 202446 4712873 ~ 4721468 (+)
retreg3 fam134c other upstream 212598 4692477 ~ 4711316 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other upstream 253268 4620218 ~ 4670646 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 937630 3966733 ~ 3986284 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 77866 5003548 ~ 5014516 (+)
G206166 NA other downstream 731930 5657612 ~ 5660848 (+)
tmem98 tmem98,LOC107674611,LOC107738157,LOC107654470,LOC107720031 other downstream 963870 5889552 ~ 5898200 (+)
si:ch211-198p11.6 LOC108276725 other downstream 1205098 6130780 ~ 6134572 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other downstream 1234652 6160334 ~ 6175366 (+)

Expression


Co-expression Network