LOC117598970


Basic Information

Item Value
gene id LOC117598970
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 21912612 ~ 21913349 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579405.1
CAGCTTGTTGCTCAGCTAAAGCTCATATCACCCACCTGAATTACAGAACTTCCAACCATCACAGAGTTTGATTATGGGGCTAAGTGTCATTCAGCAGTGCATTTTTATACTCATGTTAACACAAGGTTTTTGCAGTGCTGAGATCAGACTGGACCAGTCTCCTGCTGTGGTAAAGAGACCTGGAGAAACTGTGAAGATCTCTTGTAAAATCAGTGGATATTCAATGACAAGCAACAACATAGCCTGGATACGACAGAAACCAGGGAAAGCTCTGGAATGGATTGGTAGGATGAGTACAGGCGATAATGAAGCAACATATGCAGAGTCTGTGAAAAACCAGCTCATCTTTACAGAAGACGTCCCAGCAAGCACACAGTACTTAGAGGCCAAGAGTCTGAGGACAGAGGACACTGCGGTTTATTACTGCGCCCGAGACGCCACAGTGACTGAAGCTGAGGAAGCAGCTgtacaaaaaccacacacacatttaatcacACAGCATTTTACTGAACAAGTCATTACTGTTGTCATTTATGCAAAGCATGAATATATTCTGACTCTTTTACTATGGTTAATAAACTGCTCAATTACATCTTGTTTACacttgtttatattacaaaccAGAGactttgaatgaataaatttgtattATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579405.1 True 655 lncRNA 0.41 2 21912612 21913349

Neighbor

gene id symbol gene type direction distance location
LOC117598775 NA coding upstream 243730 21668341 ~ 21668882 (+)
LOC117598774 NA coding upstream 246868 21664594 ~ 21665744 (+)
LOC117598848 NA coding upstream 249072 21663095 ~ 21663540 (+)
LOC117599000 NA coding upstream 251573 21660425 ~ 21661039 (+)
LOC117598992 NA coding upstream 253505 21658502 ~ 21659107 (+)
LOC113546929 NA coding downstream 624153 22537502 ~ 22548866 (+)
cckb LOC108274239 coding downstream 701510 22614859 ~ 22621980 (+)
rnf44 rnf44 coding downstream 820386 22733735 ~ 22754432 (+)
pdlim7 pdlim7 coding downstream 868017 22781366 ~ 22825233 (+)
LOC113546949 LOC108277208 coding downstream 1228365 23141714 ~ 23143760 (+)
LOC117598790 NA non-coding upstream 793 21911288 ~ 21911819 (+)
LOC117598935 NA non-coding upstream 2516 21909653 ~ 21910096 (+)
LOC117598962 NA non-coding upstream 13273 21898908 ~ 21899339 (+)
LOC117598900 NA non-coding upstream 18451 21893169 ~ 21894161 (+)
LOC117598789 NA non-coding upstream 20481 21891598 ~ 21892131 (+)
G215069 NA non-coding downstream 3070 21916419 ~ 21995065 (+)
G215075 NA non-coding downstream 10629 21923978 ~ 21966233 (+)
G215035 NA non-coding downstream 102469 22015818 ~ 22020735 (+)
G215093 NA non-coding downstream 144995 22058344 ~ 22059756 (+)
G215095 NA non-coding downstream 164141 22077490 ~ 22133009 (+)
LOC117598788 NA other upstream 25188 21886676 ~ 21887424 (+)
LOC117598934 NA other upstream 27034 21885135 ~ 21885578 (+)
G215013 NA other upstream 28099 21874139 ~ 21884513 (+)
LOC117598885 NA other upstream 28189 21883969 ~ 21884423 (+)
LOC117598892 NA other upstream 37997 21874153 ~ 21874615 (+)
LOC117598791 LOC108275153 other downstream 6575 21919924 ~ 21977381 (+)
LOC117598968 NA other downstream 63611 21976960 ~ 21979634 (+)
LOC117598891 NA other downstream 67604 21980953 ~ 21981815 (+)
LOC117598876 NA other downstream 73600 21986949 ~ 21987425 (+)
LOC117598905 NA other downstream 75234 21988583 ~ 21989238 (+)

Expression


Co-expression Network