LOC113528473


Basic Information

Item Value
gene id LOC113528473
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20264198 ~ 20393220 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579412.1
TTGGTGTTTTCCCGCCAGAACGCCGCCGCTGTTAAGCTCCAGTGTGACGTAAAGCTCAGGCTGCCTGTGACCGCATAACAGCTGCTCAATAAATCTGCTCAGGTTCCCTTTTTTAAAGACTGGAGTGCGAGTCAGTGTTTGGATGGACCTCCTGTCAGGTACTCCTCAACACCCCTTCCCCCTGCCCCATCTGTTCAGAGAGAAGAAACCTGTAATCTCACAGTGCAGCCGGATAATTCTTgtgttaacaaaaacaaaaaactatgaTGTGCTTTGGAAAAAACCTAACAACAAGAAATGCAATAAAAGAAGGATAAATACTGACGGtgcttttccaagatggagaTGTAATTTATTTCTGGTGAAGGGGTTGAAGCTGGACACAGAATCGGCGATGTTGCCCCTGGACAGAGCACTAAAAATGGGAGAAATGGGATCGTGACAGATTCTTCATCCACACCACATCACCATCCTTCTCTCTGCAAAGGTGCCAACATCTACTGTGTAGCTGTAGgatttttgaccccttgctacGGTGATATgagagacacctgaaaactacacTTCTCTGATTTTTCAACTAAAGAAGAGGTAAGAAGGATCATGaataaaaggatttttttt
>XR_004579413.1
TTGGTGTTTTCCCGCCAGAACGCCGCCGCTGTTAAGCTCCAGTGTGACGTAAAGCTCAGGCTGCCTGTGACCGCATAACAGCTGCTCAATAAATCTGCTCAGGTTCCCTTTTTTAAAGACTGGAGTGCGAGTCAGTGTTTGGATGGACCTCCTGTCAGGTACTCCTCAACACCCCTTCCCCCTGCCCCATCTGTTCAGAGAGAAGAAACCTGTAATCTCACAGTGCAGCCGGATAATTCTTgtgttaacaaaaacaaaaaactatgaTGTGCTTTGGAAAAAACCTAACAACAAGAAATGCAATAAAAGAAGGATAAATACTGACGGtgcttttccaagatggagaTGTAATTTATTTCTGGTGAAGGGGTTGAAGCTGGACACAGAATCGGCGATGTTGCCCCTGGACAGAGCACTAAAAATGGGAGAAATGGGATCGTGACAGATTCTTCATCCACACCACATCACCATCCTTCTCTCTGCAAAGGTGCCAACATCTACTGTGTAGCTGTAGgatttttgaccccttgctacGGTGATATgagagacacctgaaaactacacTTCTCTGATTTTTCAACTAAAGAAGAGAGCAAGAAAACCTCTCAGCATAAagaaatacagacacacaaacacacaggagaaCATGGAAAACTGGAGAAACTACAGACAAGGACACCCAGAGAATGCTAGTTACGTATGTAATTGTAGTTCTATTAATACATAACCCTGTAAGAACCACCAGTATCCCTGTGACATCAAAAAAACAGCACCAGTTGTGAGTTATCTCTTTCAGGGGGGAACAGCCTCCAACTGGAATCCTTCTACTAGAAGTGTCCTACACTGCTTGCAGACTAATGTTTGAGCTCCCTCTTTTGAGGCAAGGAGATGTATCGACCTGTGGCATGATGACCCATTTCACCAACTTGCTCATGTCTGAAATTGGTAAGGCTTTGAACCCCAAAAAGAAACAGTGAGCTCTGAAACTGT
>XR_004579414.1
TTGGTGTTTTCCCGCCAGAACGCCGCCGCTGTTAAGCTCCAGTGTGACGTAAAGCTCAGGCTGCCTGTGACCGCATAACAGCTGCTCAATAAATCTGCTCAGGTTCCCTTTTTTAAAGACTGGAGTGCGAGTCAGTGTTTGGATGGACCTCCTGTCAGGTACTCCTCAACACCCCTTCCCCCTGCCCCATCTGTTCAGAGAGAAGAAACCTGTAATCTCACAGTGCAGCCGGATAATTCTTgtgttaacaaaaacaaaaaactatgaTGTGCTTTGGAAAAAACCTAACAACAAGAAATGCAATAAAAGAAGGATAAATACTGACGGtgcttttccaagatggagaTGTAATTTATTTCTGGTGAAGGGGTTGAAGCTGGACACAGAATCGGCGATGTTGCCCCTGGACAGAGCACTAAAAATGGGAGAAATGGGATCGTGACAGATTCTTCATCCACACCACATCACCATCCTTCTCTCTGCAAAGGTGCCAACATCTACTGTGTAGCTGTAGgatttttgaccccttgctacGGTGATATgagagacacctgaaaactacacTTCTCTGATTTTTCAACTAAAGAAGAGGAGAGAAATGGATTCGTCCGCCATGACGCTTCTTCGTTGCCAAGGAAACCAAGGTTCCTGCAGGAGCCTTGAATGAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579412.1 False 624 lncRNA 0.44 3 20264198 20327353
XR_004579413.1 True 990 lncRNA 0.44 4 20264198 20393220
XR_004579414.1 False 670 lncRNA 0.46 4 20264198 20374853

Neighbor

gene id symbol gene type direction distance location
drd5a drd5,LOC107701828 coding upstream 261518 20000958 ~ 20002680 (+)
zbtb49 zbtb49 coding upstream 267265 19963720 ~ 19996933 (+)
mcm7 mcm7,LOC107716516,LOC107744067,LOC107665623 coding upstream 363214 19888315 ~ 19900984 (+)
LOC113527852 stag3 coding upstream 378643 19860406 ~ 19885555 (+)
LOC113528548 stk32b coding upstream 421516 19826650 ~ 19842682 (+)
leprotl1 leprotl1,LOC103152176 coding downstream 37421 20430641 ~ 20438868 (+)
LOC113528524 LOC108258618 coding downstream 46221 20439441 ~ 20444946 (+)
ankrd50 ankrd50 coding downstream 353488 20746708 ~ 20779232 (+)
dele1 kiaa0141 coding downstream 642040 21035260 ~ 21044307 (+)
LOC113528291 LOC108261075,LOC108434533 coding downstream 654041 21047261 ~ 21082014 (+)
G214144 NA non-coding upstream 49771 20213406 ~ 20214427 (+)
G214098 wdr1 non-coding upstream 82320 20071695 ~ 20181878 (+)
G214012 NA non-coding upstream 294042 19968008 ~ 19970156 (+)
G213984 NA non-coding upstream 351823 19912139 ~ 19912375 (+)
LOC117598770 NA non-coding upstream 471539 19784413 ~ 19792659 (+)
G214369 NA non-coding downstream 78309 20471529 ~ 20471764 (+)
LOC117598998 NA non-coding downstream 451921 20845141 ~ 20852594 (+)
G214548 NA non-coding downstream 515608 20908828 ~ 20926678 (+)
G214694 NA non-coding downstream 751600 21144820 ~ 21158088 (+)
G214723 NA non-coding downstream 769680 21162900 ~ 21163304 (+)
LOC113528520 znf518b other upstream 90846 20022509 ~ 20173352 (+)
G214015 lyar other upstream 282818 19978314 ~ 19981380 (+)
LOC113528304 evc2 other upstream 310912 19933824 ~ 19953286 (+)
LOC113528458 LOC108275785 other upstream 352466 19873076 ~ 19911732 (+)
LOC113528521 tnrc6a,LOC107719974,LOC107590441,LOC107721518,LOC107654452,LOC107688138 other upstream 809164 19373236 ~ 19455034 (+)
nudt6 nudt6 other downstream 618554 21011774 ~ 21024087 (+)
hopx hopx other downstream 947196 21340416 ~ 21349086 (+)
LOC113540568 LOC108280981,LOC108280985,LOC108277574,LOC108277545,LOC108280967 other downstream 1088802 21482022 ~ 21513040 (+)
LOC113540569 LOC108280981,LOC108280985,LOC108277545,LOC108277574,LOC108280967 other downstream 1121353 21514573 ~ 21565376 (+)
G215015 LOC108275153 other downstream 1252860 21646080 ~ 21649152 (+)

Expression


Co-expression Network