LOC117598997


Basic Information

Item Value
gene id LOC117598997
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9441986 ~ 9446104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579418.1
TTTGGTTTAGTCTGTGGTCTTATTGATGGCTACATAGGACATGTGTTACTAATGTATTTAAACCTTTTATCATTAGGAAAAAACAGTCTTAATTTATTGGATTTCCTTGCATAGGTGGGAACTGGATTCCTGTTTATCTCCTGCGTATTTTGTTCATCAGTTAATCACAGCAGAGATGAAGGTGTGCTGTAATACAGAGACCACAGCACAGAAACTGACCAATGAGCTGCGTTGCTGTTTTTGCATCAGAGGCTGTCTGGACTTTTACTCTCCAGCACAAAGAAAACATCATTGCTGTATcaaattaagtaattaagtatTATTTGACAGACCAAGtcagacaaagaaaaatCCAGCTGTGCCACCTCTCCCCTCCCCCTACTAAAATACGGGAGGAAAAAACAGTGGAAGGCTGGGGACAAAGGACGGCGTGGGAACTGCATATGATCAGAGCTCGGAAAAAAATCAGCGGTTTGGTACTGGGACCATATCTTCAGTGATCCAGCCATCTTCAAGACCCCCTCCTCCATTTTCGCACAGGAGATCCGCTAACAGGAAATCAATGCCCTTCTTTTGTAGCTACAATTTTTGGACATCCTTATTGTGTCCTTTTCTTATCTACTGTCTGGTGTATGTGGGCTGGATGTGTCAGGTTCTCATATCATCTTGCAAAGGGAGGATTTCATATCTGAAATACTGTTGGTTGTGTTTTTAGGACAAAATGCTAGACCATCTTGATATATCTTTAAAACCTTTACACTGTTTGGTAGTAGGAGGCTTGATAGACTTCCTTTTGAGCCCCTCATGCTTCTTTAATGGGGCCAACACAAACACGCGTGGGCCCACAGCAGGGCTCCAAATGAACCTGGTCAAGAACATGAAGAAGGAAAGCAGAAATTAAACGTTTGCAGAATGCTGGTGTAGCACCTCCTCCTGCAGCACCATACGATTCCCACTGAGCTGTAATACATCATTTGAGTAGCTGCTCCAGCGAAGGACATATCCCACAATGCCCTGCAAGGCGGGGTGCCGGGGTACCCGTTGTGGCACACTCGCACGCCTCCATGTGCCACGTTAACTTtccatttgtctttcttttcctgTCAGCAAATATTATGTGGAAAGGGATCCTCTCTGGCAGAACTGTGATCTATCTGAGCTAGTAAATGACTATGTCTATTTTATTCAAAGAGGAATTTCAAATGCCAAAATGCCTTCAGTAGTTCTAGAGTGTCACACACGCTAATCTCTCAGTTAGCATGAATTCTTTGCCATGAAGAATAAAATGCAATGCTAATGTTGGCTCTAGATAGCCCAAACAGCAGAATGTATTGTGATCGCTCTAATGGGACAGAAAAGATAAGCCATTTGATTACTTTCATTTGTCTTCATGTGTTCGGACTTTTTCCTGCCTTGAGTTTGTGCTTCATTACctgtgtgatttttgtgataCATTCTGTTACGAGGACAAGCTGTGATTTTGAGtaatgtgtgtatcagtgtggtGTAGACAGGTAACCGCTGCCTAATGCACACTCACAAATGTATTTGTCCTCATACATATTCTGATTGGGGAAATATCACAGCCAGGAAAATGTCTGCGACAGGCAAGATAGAGTAACCTCAGAGAGAGTGAACgatagaaaagagagagagagagagagagagagagagagagggagggagggaggaagggaggtATTTGTCAGGGATATGGATAAACCAGACATGCAGAGACATGGGTTGACTGCTGGCAATCACGGAAAACAGTAAGTCCTGTTCAACGGTGAAAAGGAGAGCATGGAATAGAGACAGGAAAAAGGAacgagagtgagagtgagagcgagagcgagacgGGGCACAGGTTGGCCAGTTGTCAGGGCAACACCAGGCCCCTGGAGAGGAAAGGGGGTGCCTGGTCTCGGCTGGCAAGCAGAACACCTGCCCTCCTCTGATCTGTAGGGAATTACCCTGCTCGAGAGCAGATGAGGACCCTtaaaattagagagagagaaagcaagaaagagagagaggagtccAACCACCATGAGCATCTGTCCAATGAGAGgagttgaatttatttattatcttggAGGAAGAGGTGGTTCCATGGGGGTTTGATTAATGTCCAGCCCTCCATCTTGTCAGTCTGTTTTTGTCCGCTGAAAGGAAAACAAAGCGTGGGGGGCTGAGAGAGCGCA
>XR_004579419.1
AGAAATTGGAAGATGATCAGGAATGAATCATCCATGAGGTGGGAACTGGATTCCTGTTTATCTCCTGCGTATTTTGTTCATCAGTTAATCACAGCAGAGATGAAGGTGTGCTGTAATACAGAGACCACAGCACAGAAACTGACCAATGAGCTGCGTTGCTGTTTTTGCATCAGAGGCTGTCTGGACTTTTACTCTCCAGCACAAAGAAAACATCATTGCTGTATcaaattaagtaattaagtatTATTTGACAGACCAAGtcagacaaagaaaaatCCAGCTGTGCCACCTCTCCCCTCCCCCTACTAAAATACGGGAGGAAAAAACAGTGGAAGGCTGGGGACAAAGGACGGCGTGGGAACTGCATATGATCAGAGCTCGGAAAAAAATCAGCGGTTTGGTACTGGGACCATATCTTCAGTGATCCAGCCATCTTCAAGACCCCCTCCTCCATTTTCGCACAGGAGATCCGCTAACAGGAAATCAATGCCCTTCTTTTGTAGCTACAATTTTTGGACATCCTTATTGTGTCCTTTTCTTATCTACTGTCTGGTGTATGTGGGCTGGATGTGTCAGGTTCTCATATCATCTTGCAAAGGGAGGATTTCATATCTGAAATACTGTTGGTTGTGTTTTTAGGACAAAATGCTAGACCATCTTGATATATCTTTAAAACCTTTACACTGTTTGGTAGTAGGAGGCTTGATAGACTTCCTTTTGAGCCCCTCATGCTTCTTTAATGGGGCCAACACAAACACGCGTGGGCCCACAGCAGGGCTCCAAATGAACCTGGTCAAGAACATGAAGAAGGAAAGCAGAAATTAAACGTTTGCAGAATGCTGGTGTAGCACCTCCTCCTGCAGCACCATACGATTCCCACTGAGCTGTAATACATCATTTGAGTAGCTGCTCCAGCGAAGGACATATCCCACAATGCCCTGCAAGGCGGGGTGCCGGGGTACCCGTTGTGGCACACTCGCACGCCTCCATGTGCCACGTTAACTTtccatttgtctttcttttcctgTCAGCAAATATTATGTGGAAAGGGATCCTCTCTGGCAGAACTGTGATCTATCTGAGCTAGTAAATGACTATGTCTATTTTATTCAAAGAGGAATTTCAAATGCCAAAATGCCTTCAGTAGTTCTAGAGTGTCACACACGCTAATCTCTCAGTTAGCATGAATTCTTTGCCATGAAGAATAAAATGCAATGCTAATGTTGGCTCTAGATAGCCCAAACAGCAGAATGTATTGTGATCGCTCTAATGGGACAGAAAAGATAAGCCATTTGATTACTTTCATTTGTCTTCATGTGTTCGGACTTTTTCCTGCCTTGAGTTTGTGCTTCATTACctgtgtgatttttgtgataCATTCTGTTACGAGGACAAGCTGTGATTTTGAGtaatgtgtgtatcagtgtggtGTAGACAGGTAACCGCTGCCTAATGCACACTCACAAATGTATTTGTCCTCATACATATTCTGATTGGGGAAATATCACAGCCAGGAAAATGTCTGCGACAGGCAAGATAGAGTAACCTCAGAGAGAGTGAACgatagaaaagagagagagagagagagagagagagagagagggagggagggaggaagggaggtATTTGTCAGGGATATGGATAAACCAGACATGCAGAGACATGGGTTGACTGCTGGCAATCACGGAAAACAGTAAGTCCTGTTCAACGGTGAAAAGGAGAGCATGGAATAGAGACAGGAAAAAGGAacgagagtgagagtgagagcgagagcgagacgGGGCACAGGTTGGCCAGTTGTCAGGGCAACACCAGGCCCCTGGAGAGGAAAGGGGGTGCCTGGTCTCGGCTGGCAAGCAGAACACCTGCCCTCCTCTGATCTGTAGGGAATTACCCTGCTCGAGAGCAGATGAGGACCCTtaaaattagagagagagaaagcaagaaagagagagaggagtccAACCACCATGAGCATCTGTCCAATGAGAGgagttgaatttatttattatcttggAGGAAGAGGTGGTTCCATGGGGGTTTGATTAATGTCCAGCCCTCCATCTTGTCAGTCTGTTTTTGTCCGCTGAAAGGAAAACAAAGCGTGGGGGGCTGAGAGAGCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579418.1 True 2201 lncRNA 0.45 4 9441986 9446050
XR_004579419.1 False 2125 lncRNA 0.45 5 9441986 9446104

Neighbor

gene id symbol gene type direction distance location
LOC113528600 LOC108258913 coding downstream 29376 9401685 ~ 9412610 (-)
adsl adsl coding downstream 50626 9380674 ~ 9391360 (-)
tmem150b tmem150b coding downstream 62390 9373152 ~ 9379596 (-)
pdgfbb LOC108260470 coding downstream 106356 9321259 ~ 9335630 (-)
pvalb6 pvalb6,LOC108258409,LOC108412390,LOC100701083,LOC103371237,LOC107690741,LOC101478422,LOC107602319 coding downstream 156046 9247782 ~ 9285940 (-)
cbx1a LOC108279860,LOC108413138,LOC103037352 coding upstream 44244 9490348 ~ 9501580 (-)
hoxb1a hoxb1,LOC108274656 coding upstream 208339 9654443 ~ 9658406 (-)
hoxb2a hoxb2,LOC107687781 coding upstream 223505 9669609 ~ 9673077 (-)
hoxb3a hoxb3,hoxb3a,LOC108278472,LOC107687775,LOC107740615,LOC107582888 coding upstream 229658 9675762 ~ 9722637 (-)
hoxb4a hoxb4,hoxb4a,LOC107740620,LOC107585041 coding upstream 251927 9698031 ~ 9702424 (-)
G208189 NA non-coding downstream 338860 9102911 ~ 9103126 (-)
G208158 nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 non-coding downstream 378479 9061580 ~ 9063507 (-)
G208153 NA non-coding downstream 411008 9030525 ~ 9030978 (-)
G208151 NA non-coding downstream 417003 9024761 ~ 9024983 (-)
G208145 NA non-coding downstream 434727 9007000 ~ 9007259 (-)
G208391 NA non-coding upstream 48519 9494623 ~ 9505750 (-)
G208473 NA non-coding upstream 300392 9746496 ~ 9748039 (-)
LOC117599011 NA non-coding upstream 383523 9829627 ~ 9927942 (-)
LOC113528446 NA non-coding upstream 391146 9837250 ~ 9838412 (-)
G208613 msl1 non-coding upstream 468803 9914907 ~ 9917529 (-)
prr15la LOC108273894,LOC108412372 other downstream 22402 9409804 ~ 9419584 (-)
dnal4a dnal4,LOC108261343,LOC108412416,LOC108436609,LOC106591471 other downstream 238346 9196496 ~ 9203640 (-)
LOC113527952 LOC108260010,LOC108274064 other downstream 299115 9112966 ~ 9142871 (-)
ndufa4l ndufa4l,LOC108260900,LOC108413413,LOC107684646,LOC107590798,LOC103026352,LOC107582867 other downstream 728668 8707954 ~ 8713318 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other downstream 1152178 8279767 ~ 8289808 (-)
copz2 copz2,LOC108260256,LOC108413159,LOC107740614,LOC107662379,LOC107710054,LOC107585036,LOC107687783,LOC105013247,LOC108246742,LOC106527321,LOC106912034 other upstream 18227 9464331 ~ 9474478 (-)
hoxb8a hoxb8a,LOC108278530,LOC108413053,LOC103044850,LOC107582957,LOC107662386,LOC107585089 other upstream 283747 9729851 ~ 9732566 (-)
tecpr1b LOC108276900 other upstream 1004620 10450724 ~ 10470518 (-)
hmox1a hmox1,LOC108432221 other upstream 2196053 11642157 ~ 11647997 (-)
zgc:162612 foxd1,LOC108278341,LOC107757501 other upstream 2253745 11699849 ~ 11701172 (-)

Expression


Co-expression Network