LOC117599001


Basic Information

Item Value
gene id LOC117599001
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1525663 ~ 1528233 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579429.1
ACATGGAGGGAACAGAGAGGAATGCGAGAGAATAGTGTTGATATTGAAAAACCAAAAAGTAAAGCAGAAATTACTAATTTTGCACAATGATGATTTGGAAAGTTTGGaaagacaaatatttttaaacatccaGAAAAAAGGGTTAAGGAAATGTAAGAAGGAGAAACAGAAATGAAGGAGAAACAGAAATGAaggagaaacagaaataaaggacTCAGACTGCTGTTTCAGCAGATTACAGCTTTCTGTCGATATAAGCACATGAGGAGAGACATTAGACGGCAGGAGAGGCCTAGAAGACTGGAACACAGCACCTGTTACGGTTAAAATCAGTTTCATCATTTCCTCCAAAACATCAAAAGCTCCCACCCACAGTGTTTGACTGACAGACGACCTTGATAAAAGCGAAGATGTAAATACAAAGAGGActgcatttgtgttttatttcggGCCGAAGAAGAAGCGTGAAGAAGAGGAAATGCAGTCGTAAATATCAGTGATGCTGTCTGTGCTGTATCTAAGGATTCAACTAATGCACTggatgcaaaagtttgtgtccatcatgtttttttatggaaaaaaaggaaaaatattccTCTATTTTAGAGTTTATATTACAAAAGGAAATagaattacaaataaaaataaagaatgaattaAGAAAACAACAGATCAGTACCTGGAACTgaggc

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048285 organelle fission biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0007059 chromosome segregation biological_process
GO:0030261 chromosome condensation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000280 nuclear division biological_process

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579429.1 True 692 lncRNA 0.36 3 1525663 1528233

Neighbor

gene id symbol gene type direction distance location
LOC113528659 NA coding downstream 26058 1499515 ~ 1499605 (-)
LOC113528660 NA coding downstream 26313 1499261 ~ 1499350 (-)
LOC113527946 LOC108280870,LOC103034911 coding downstream 209488 1309888 ~ 1316175 (-)
LOC113528189 NA coding downstream 219300 1302401 ~ 1306363 (-)
LOC113525779 NA coding downstream 231424 1282400 ~ 1294239 (-)
mybpc2a mybpc2,LOC107729557,LOC107680879,LOC107732898 coding upstream 239073 1767306 ~ 1812044 (-)
akt1s1 akt1s1,LOC107564011,LOC107680841 coding upstream 313756 1841989 ~ 1859709 (-)
aoc2 LOC108276610 coding upstream 697378 2225611 ~ 2233295 (-)
LOC113528224 LOC108276032 coding upstream 741438 2269671 ~ 2283303 (-)
LOC117598982 LOC108276075,LOC108276032 coding upstream 761184 2289417 ~ 2304449 (-)
G203733 NA non-coding downstream 24848 1499020 ~ 1500815 (-)
G203739 NA non-coding downstream 68265 1455187 ~ 1457398 (-)
G203630 NA non-coding downstream 284474 1238164 ~ 1241189 (-)
G203609 NA non-coding downstream 414351 1111087 ~ 1111312 (-)
G203559 LOC108280785 non-coding downstream 482016 1041491 ~ 1043647 (-)
LOC117598750 NA non-coding upstream 189780 1718013 ~ 1718791 (-)
G204080 NA non-coding upstream 202768 1731001 ~ 1731200 (-)
G204084 NA non-coding upstream 207285 1735518 ~ 1735720 (-)
G204087 NA non-coding upstream 221949 1750182 ~ 1750391 (-)
G204090 NA non-coding upstream 238418 1766651 ~ 1766869 (-)
G203695 LOC108427335,LOC107658445,LOC107729508,LOC103035240,LOC107674167,LOC107732842,LOC107563993 other downstream 180492 1265662 ~ 1345171 (-)
LOC113528609 LOC108280700,LOC108280715,LOC108280710,LOC108280689,LOC108280734 other downstream 395113 1126684 ~ 1130550 (-)
si:dkey-66i24.7 LOC108280857,LOC108427346 other downstream 458843 947730 ~ 1066820 (-)
G203544 NA other downstream 614435 910117 ~ 911228 (-)
LOC117598979 NA other downstream 771841 750063 ~ 753822 (-)
LOC113527889 LOC108278777 other upstream 462940 1991173 ~ 2013251 (-)
LOC113528455 LOC108278793,LOC108434931,LOC107551147,LOC107729474 other upstream 537655 2065888 ~ 2077477 (-)
ifi35 ifi35 other upstream 584212 2112445 ~ 2195540 (-)
LOC113528223 LOC108276032,LOC108261353,LOC108261342 other upstream 803443 2331676 ~ 2344912 (-)
LOC113528062 LOC108276032,LOC108276106 other upstream 904916 2433149 ~ 2538111 (-)

Expression


Co-expression Network