LOC117599003


Basic Information

Item Value
gene id LOC117599003
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 18070785 ~ 18076387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579431.1
CCTGCGTTTCTGAAAGTTTAGCTTCAGCTGGCTTTAACGGGAGAAAATGCAAACATATATTCAGTTGTACTTGGTTCTCAGTCCACTAAAGAGCGGCCTCAGCAGACTCCTTCTCGTTCTCAATCGAGCTATGGAACTGCCAATCAGCCGTCAACAAGGCTGATTTCATTCCTGCCTTTGCCACCCACTCCAACCTCAGTTTGCTGGCTCTGAATGAGACCTGGATGCAAAGAGAGAACACTGCAACACCCGATGCCCTGGCCTCCAATTTCAACTTCTCCCACACCACAGATAAGCCACAAGCAGCTGACATTCTTGCTTTTCTACCTACGTTTGAACTGAAGCAGCTTCCCACCCCAGCAACTCATAAAGCTGGCAAACAGCTCGTCCTCATCCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579431.1 True 400 lncRNA 0.49 3 18070785 18076387

Neighbor

gene id symbol gene type direction distance location
jmjd6 jmjd6,LOC107748872,LOC107565873 coding downstream 84897 17981013 ~ 17985888 (-)
foxj1a LOC108274501,LOC108274674,LOC108263299 coding downstream 136369 17930709 ~ 17934416 (-)
crebbpb LOC108279275,LOC107661648,LOC107553628 coding downstream 793429 17180996 ~ 17277356 (-)
glis2b LOC108276531 coding downstream 1031841 16974721 ~ 17038944 (-)
vasnb LOC108276517 coding downstream 1139157 16909913 ~ 16931628 (-)
LOC113528252 dnaaf5 coding upstream 25054 18101441 ~ 18161879 (-)
LOC117598994 LOC101884462,LOC107081104,LOC101885893 coding upstream 313495 18389882 ~ 18394978 (-)
LOC117598995 LOC108191637 coding upstream 500217 18576604 ~ 18577377 (-)
znf207a znf207,LOC108278632,LOC108444040 coding upstream 634693 18711080 ~ 18720341 (-)
slc25a23b slc25a23b,LOC108274688,LOC107601238,LOC107698653,LOC108444036,LOC107724434,LOC107689624 coding upstream 659266 18735653 ~ 18756676 (-)
G213028 NA non-coding downstream 27506 18041404 ~ 18043279 (-)
G212891 NA non-coding downstream 170515 17900070 ~ 17900270 (-)
G212871 NA non-coding downstream 184543 17886012 ~ 17886242 (-)
G212856 NA non-coding downstream 190939 17879629 ~ 17879846 (-)
G212818 NA non-coding downstream 200133 17869886 ~ 17870652 (-)
G213407 NA non-coding upstream 716048 18792435 ~ 18849147 (-)
G213549 NA non-coding upstream 947371 19023758 ~ 19072985 (-)
G213716 tnrc6a non-coding upstream 1340797 19417184 ~ 19422415 (-)
G213879 NA non-coding upstream 1586950 19663337 ~ 19663762 (-)
G214159 NA non-coding upstream 1944165 20020552 ~ 20056144 (-)
mettl23 mettl23 other downstream 16569 18050735 ~ 18054216 (-)
tsen54 tsen54 other downstream 198204 17811613 ~ 17872581 (-)
G212750 LOC100136012,LOC107575789 other downstream 395501 17674827 ~ 17675284 (-)
LOC113528038 caskin2 other downstream 552258 17390186 ~ 17518527 (-)
G212700 NA other downstream 644884 17386211 ~ 17425901 (-)
LOC117598999 NA other upstream 299297 18375684 ~ 18377363 (-)
si:dkey-204f11.64 LOC108274053 other upstream 747084 18823471 ~ 18827734 (-)
rbbp6 rbbp6 other upstream 1352830 19429217 ~ 19448559 (-)
lyar lyar other upstream 1863967 19940354 ~ 19984149 (-)
slc2a9l2 slc2a9 other upstream 1963400 20039787 ~ 20138213 (-)

Expression


Co-expression Network