LOC117599008


Basic Information

Item Value
gene id LOC117599008
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 23591868 ~ 23593648 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579448.1
CTTCTGAAACCCTGTTCTGAGTTAAAGCCCAGGCACAAAATCCTGACTTTCCCAATCCAAACAGCGTTCCCAGAACACCTcggaaaaggaaaaaggaaaggaaagaggtgaaaaagaagaaaacagagcCTTGGACCATTTGTAAGATTGAGTTTCACAGGACGGCTGAACCCGGAGGACTGTCCGTTGGCCCATATGGAGGAGTTTGGGACGGCGAACAATAAGGGAAAACCCCTGGCCGTGGCTTTCTCCCCCTCCGCTTTGCCAATAAAGCTCCTTCCTGAGTGAACATTAACATGGGAAtCTCACAGGGACTTTCCCGTCAAAATAAAGATGACATGCAGTCAAATAAAAATCCAGACGTTTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579448.1 True 370 lncRNA 0.47 3 23591868 23593648

Neighbor

gene id symbol gene type direction distance location
LOC113546983 LOC108277145,LOC108432419,LOC103366337,LOC107082714,LOC107697613,LOC105918713 coding upstream 37360 23457803 ~ 23554508 (+)
LOC113546963 slc39a8 coding upstream 236525 23342961 ~ 23355343 (+)
atoh1b LOC108277232 coding upstream 306248 23283248 ~ 23285620 (+)
LOC113546948 LOC108277208 coding upstream 421019 23168344 ~ 23170849 (+)
LOC113546950 NA coding upstream 428625 23160463 ~ 23163243 (+)
cpxm1b LOC108274665,LOC105911438,LOC102297474,LOC102196974,LOC102797758 coding downstream 118871 23712519 ~ 23730112 (+)
noa1 noa1 coding downstream 173926 23767574 ~ 23772974 (+)
eef2kmt eef2kmt coding downstream 180732 23774380 ~ 23778006 (+)
c13h16orf89 c2h16orf89 coding downstream 190988 23784636 ~ 23790699 (+)
si:ch211-76l23.4 si:ch211-76l23.4,LOC108256336,LOC101172412 coding downstream 216651 23810299 ~ 23813635 (+)
G215685 NA non-coding upstream 202515 23388418 ~ 23389353 (+)
G215667 NA non-coding upstream 225073 23366281 ~ 23366795 (+)
G215666 NA non-coding upstream 227288 23364358 ~ 23364580 (+)
G215664 NA non-coding upstream 232309 23356191 ~ 23359559 (+)
G215656 NA non-coding upstream 272730 23318745 ~ 23319138 (+)
G215824 NA non-coding downstream 28724 23622372 ~ 23622609 (+)
LOC117598845 NA non-coding downstream 154559 23748207 ~ 23751597 (+)
LOC117598769 NA non-coding downstream 748040 24341688 ~ 24363384 (+)
G216174 NA non-coding downstream 830118 24423766 ~ 24444172 (+)
G216171 NA non-coding downstream 851425 24445073 ~ 24447468 (+)
G215621 LOC108277208 other upstream 421315 23137246 ~ 23170553 (+)
G215347 NA other upstream 755966 22835664 ~ 22835902 (+)
trnat-cgu_7 NA other upstream 811292 22780286 ~ 22780576 (+)
higd2a higd2a other upstream 822232 22765814 ~ 22769636 (+)
LOC113546936 NA other upstream 1121190 22470179 ~ 22470678 (+)
LOC113546919 LOC108278588 other downstream 137806 23731454 ~ 23741390 (+)
igfbp7 igfbp7 other downstream 148834 23742482 ~ 23748131 (+)
fbxl16 fbxl16,LOC107738613,LOC107685932,LOC107568127,LOC107733860,LOC107568165,LOC107690242 other downstream 300599 23894247 ~ 23920403 (+)
rbfox1 rbfox1,LOC107733849 other downstream 445260 24038908 ~ 24330000 (+)
G216197 NA other downstream 863422 24457070 ~ 24458004 (+)

Expression


Co-expression Network