LOC117599009


Basic Information

Item Value
gene id LOC117599009
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 14487821 ~ 14490775 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579449.1
tactgatagacagcctgcatccttagagcgaagtaggcgcggcggaacgtaagGTATCTGGAGAGTGTGTCTTACTCCCAGTTCCAGTCCTGTGATGCAGACTTCCTGGCAGAGAAATTCCTGGAATGTTTCtggatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579449.1 True 140 ncRNA 0.51 2 14487821 14490775

Neighbor

gene id symbol gene type direction distance location
LOC113528481 zgc:112320,LOC108275843,LOC101168622 coding downstream 22530 14463405 ~ 14465291 (-)
si:dkey-282h22.5 LOC108261121 coding downstream 36226 14447240 ~ 14451595 (-)
LOC113528545 LOC108255936,LOC103153053 coding downstream 55101 14414913 ~ 14432720 (-)
LOC113527937 LOC108255917 coding downstream 77144 14394229 ~ 14410677 (-)
prpsap1 LOC105013149,LOC108255900,LOC106606986,LOC103375364,LOC101163819,LOC100700674,LOC108435871,LOC107731682 coding downstream 96727 14379035 ~ 14391094 (-)
LOC113528386 LOC108274059,LOC105908958,LOC108437141 coding upstream 201418 14692193 ~ 14709079 (-)
fscn2a LOC108274411,LOC108437142 coding upstream 242128 14732903 ~ 14738583 (-)
LOC113528036 LOC108255868 coding upstream 277832 14768607 ~ 14840369 (-)
LOC113527964 LOC108260935 coding upstream 384560 14875335 ~ 14878123 (-)
otop2 otop2 coding upstream 410058 14900833 ~ 14909395 (-)
G211054 LOC108275544 non-coding downstream 25412 14461792 ~ 14462409 (-)
G211003 NA non-coding downstream 157901 14329586 ~ 14329920 (-)
G210997 mgat5b,LOC108274344,LOC108435872 non-coding downstream 189623 14294307 ~ 14298198 (-)
G210973 NA non-coding downstream 270949 14216673 ~ 14216872 (-)
G210952 NA non-coding downstream 352517 14135094 ~ 14135304 (-)
G211187 NA non-coding upstream 98045 14588820 ~ 14594664 (-)
G211195 socs3 non-coding upstream 128457 14619232 ~ 14621782 (-)
G211269 NA non-coding upstream 336460 14827235 ~ 14844312 (-)
G211274 NA non-coding upstream 356477 14847252 ~ 14847456 (-)
G211346 NA non-coding upstream 443894 14934669 ~ 14935121 (-)
pecam1 LOC108279165 other downstream 458180 14017615 ~ 14029641 (-)
LOC113528401 ppp1r27a,LOC108279187,LOC107748880,LOC107558871,LOC107654574,LOC107665625,LOC107548727,LOC107743019 other downstream 481309 14004169 ~ 14006512 (-)
mcrip1 mcrip1,fam195b,LOC107654575 other downstream 486784 13993876 ~ 14001037 (-)
xylt2 xylt2,LOC107748866,LOC107665700,LOC107654585 other downstream 616690 13841166 ~ 13871131 (-)
LOC117598755 NA other downstream 1088596 13395466 ~ 13399225 (-)
G211151 usp36 other upstream 29502 14520277 ~ 14520975 (-)
LOC113528445 LOC108274755 other upstream 187975 14678750 ~ 14690132 (-)
rac1b rac3,rac1,RAC1,LOC106606208,LOC102788082,LOC107388169,LOC105898786,LOC108437155,LOC106601744,LOC105026138 other upstream 487844 14978619 ~ 14986112 (-)
LOC113528178 LOC108260277,LOC108437874,LOC105905285,LOC100698953,LOC104918338,LOC103373486,LOC106518679,LOC108241369,LOC107083184,LOC103393004 other upstream 1660300 16151075 ~ 16203991 (-)
LOC113528039 LOC108276772 other upstream 2081770 16572545 ~ 16598688 (-)

Expression


Co-expression Network