trnac-gca_17


Basic Information

Item Value
gene id trnac-gca_17
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7272255 ~ 7272326 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnac-gca_17
GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca_17 True 72 tRNA 0.57 1 7272255 7272326

Neighbor

gene id symbol gene type direction distance location
trnac-gca_16 NA coding downstream 1278 7270906 ~ 7270977 (-)
rpl19 rpl19,LOC108260855,LOC107084780,LOC108413899,LOC101075516,LOC107378566 coding downstream 47027 7217582 ~ 7225228 (-)
LOC113528017 NA coding downstream 125343 7135337 ~ 7146912 (-)
kcnj12b LOC108274453,LOC108412542,LOC107690312,LOC107567496,LOC107731081,LOC107754252,LOC107567486 coding downstream 204907 7058969 ~ 7067348 (-)
slc6a16a LOC108260811,LOC107568576,LOC107690307,LOC108413965 coding downstream 270075 6980540 ~ 7002180 (-)
trnac-gca_19 NA coding upstream 731 7273057 ~ 7273128 (-)
trnac-gca_20 NA coding upstream 1980 7274306 ~ 7274377 (-)
mapk8ip3 mapk8ip3 coding upstream 62587 7334913 ~ 7376030 (-)
jpt2 hn1l coding upstream 109270 7381596 ~ 7388394 (-)
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding upstream 147371 7419697 ~ 7423186 (-)
G207205 cacnb1,LOC108413880 non-coding downstream 10142 7255625 ~ 7262113 (-)
G207227 NA non-coding downstream 31348 7240241 ~ 7240907 (-)
G207226 NA non-coding downstream 34374 7237673 ~ 7237881 (-)
G207221 NA non-coding downstream 44591 7227385 ~ 7227664 (-)
G207198 NA non-coding downstream 95500 7176532 ~ 7176755 (-)
G207254 NA non-coding upstream 39756 7312082 ~ 7313655 (-)
G207540 NA non-coding upstream 671352 7943678 ~ 7948171 (-)
G207565 NA non-coding upstream 756880 8029206 ~ 8029449 (-)
G207571 NA non-coding upstream 760956 8033282 ~ 8036848 (-)
G207653 mrc2 non-coding upstream 838332 8110658 ~ 8114574 (-)
stat5a sta5b,stat5,LOC108279147,LOC108444239,LOC105013349 other downstream 546090 6646058 ~ 6726165 (-)
G206604 NA other downstream 1077259 6126910 ~ 6194996 (-)
LOC113528542 NA other downstream 1311205 5953733 ~ 5961050 (-)
retsat LOC108257121,LOC108432054 other downstream 1321258 5940862 ~ 5950997 (-)
G206282 NA other downstream 1430778 5841137 ~ 5841477 (-)
G207231 spsb3 other upstream 46277 7318603 ~ 7321962 (-)
natd1 natd1,LOC107661164,LOC107568532,LOC107689058 other upstream 153391 7425717 ~ 7431112 (-)
crhr1 crhr1,LOC108261365,LOC107662410,LOC108413653 other upstream 287441 7559767 ~ 7705492 (-)
slc4a1a LOC108279353 other upstream 977559 8249885 ~ 8267638 (-)
selenow2a mien1,sepw2a,LOC107566883,LOC107755209 other upstream 1007441 8279767 ~ 8289808 (-)

Expression


Co-expression Network