trnac-gca_21


Basic Information

Item Value
gene id trnac-gca_21
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7299613 ~ 7299684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnac-gca_21
GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca_21 True 72 tRNA 0.57 1 7299613 7299684

Neighbor

gene id symbol gene type direction distance location
lasp1 LOC108258608,LOC108413872,LOC107689048,LOC107745925,LOC107552489,LOC107567378,LOC107754308 coding upstream 9233 7274904 ~ 7290380 (+)
trnac-gca_18 NA coding upstream 27082 7272460 ~ 7272531 (+)
arl5c LOC108260527,LOC107754318,LOC107670909,LOC107567387,LOC107745936,LOC107689047,LOC108412527 coding upstream 31700 7263146 ~ 7267913 (+)
cacnb1 cacnb1,LOC108413880,LOC106607253,LOC107552492 coding upstream 39750 7227341 ~ 7259863 (+)
LOC113528018 NA coding upstream 84678 7203627 ~ 7214935 (+)
atp6v0ca vatl,LOC108413863,LOC106517404 coding downstream 2739 7302423 ~ 7305900 (+)
mrps34 mrps34,LOC107567325,LOC107670906 coding downstream 24276 7323960 ~ 7327094 (+)
nme3 nme3,LOC107661191 coding downstream 28436 7328120 ~ 7334236 (+)
cramp1 cramp1 coding downstream 89391 7389075 ~ 7407151 (+)
dhrs7b dhrs7b,LOC107661099,LOC107755107,LOC107745957 coding downstream 107862 7407546 ~ 7416796 (+)
G207084 NA non-coding upstream 2640 7294485 ~ 7296973 (+)
G207025 NA non-coding upstream 240794 7054386 ~ 7058819 (+)
G206955 NA non-coding upstream 297445 6930320 ~ 7002168 (+)
G206942 NA non-coding upstream 368227 6898842 ~ 6931386 (+)
G206835 ptrf non-coding upstream 489260 6730685 ~ 6810353 (+)
G207111 NA non-coding downstream 18343 7318027 ~ 7318360 (+)
G207140 NA non-coding downstream 86332 7386016 ~ 7388543 (+)
G207155 NA non-coding downstream 140393 7440077 ~ 7440281 (+)
G207157 NA non-coding downstream 143385 7443069 ~ 7443753 (+)
G207158 NA non-coding downstream 145139 7444823 ~ 7528738 (+)
LOC113528597 gjc1,LOC108412533,LOC107754260,LOC107731105,LOC107567456,LOC107653474,LOC107570945,LOC107690314 other upstream 167646 7108178 ~ 7131967 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466 other upstream 197398 7084441 ~ 7102215 (+)
LOC117598831 LOC106607284,LOC108262339,LOC108259095,LOC108259092,LOC108441610 other upstream 1038756 6252344 ~ 6260857 (+)
ypel3 ypel3,ypela,LOC108259066,LOC103040367,LOC108411043,LOC103393221,LOC105012807,LOC107686999,LOC107590566,LOC106600728 other upstream 1104649 6180096 ~ 6194964 (+)
mapk3 mapk3,LOC108256206,LOC108411041,LOC107567791,LOC107690275,LOC107686994 other upstream 1124247 6160334 ~ 6175366 (+)
spsb3a spsb3,spsb3a,LOC107689049 other downstream 9523 7309207 ~ 7321965 (+)
G207480 LOC107834952 other downstream 553507 7853191 ~ 7853509 (+)
trnas-cga_1 NA other downstream 708502 8008186 ~ 8008411 (+)
asphd1 asphd1,LOC107568490,LOC107755186,LOC107552472,LOC107739384 other downstream 1650782 8950466 ~ 8958100 (+)
nupr1b nupr1,LOC108413333,LOC107660958,LOC107739393,LOC107567154,LOC100692788,LOC103393451 other downstream 1761879 9061563 ~ 9063413 (+)

Expression


Co-expression Network