trnae-cuc_26


Basic Information

Item Value
gene id trnae-cuc_26
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3971179 ~ 3971250 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_26
tccctggaggactagtggttaggccacagcgctctcaccactgtggctcgggttcgattcccggccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc_26 True 72 tRNA 0.63 1 3971179 3971250

Neighbor

gene id symbol gene type direction distance location
LOC113528358 NA coding upstream 10541 3959057 ~ 3960638 (+)
LOC113528362 NA coding upstream 20248 3948916 ~ 3950931 (+)
ddx42 ddx42,LOC102777021 coding upstream 23634 3935396 ~ 3947545 (+)
rnf113a rnf113a,LOC107693494 coding upstream 54324 3910205 ~ 3916855 (+)
LOC113527907 LOC108259599 coding upstream 214995 3747501 ~ 3756184 (+)
map3k3 map3k3,LOC107570753,LOC107674169,LOC107658467 coding downstream 19508 3990758 ~ 4019393 (+)
LOC117598989 LOC108191637 coding downstream 58559 4029809 ~ 4030450 (+)
gfap gfap,LOC107729544 coding downstream 63316 4034566 ~ 4044375 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding downstream 86501 4057751 ~ 4104754 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding downstream 149604 4120854 ~ 4131475 (+)
G204832 NA non-coding upstream 88220 3853496 ~ 3882959 (+)
G204860 NA non-coding upstream 101436 3864913 ~ 3869743 (+)
LOC113528035 NA non-coding upstream 103082 3856054 ~ 3868097 (+)
G204815 NA non-coding upstream 184601 3776604 ~ 3786578 (+)
G204773 NA non-coding upstream 255599 3672984 ~ 3715580 (+)
G204912 NA non-coding downstream 134693 4105943 ~ 4107728 (+)
G204965 NA non-coding downstream 220487 4191737 ~ 4192099 (+)
G205242 NA non-coding downstream 384289 4355539 ~ 4356186 (+)
G205245 NA non-coding downstream 385068 4356318 ~ 4356536 (+)
G205250 NA non-coding downstream 388155 4359405 ~ 4360374 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 310015 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 771046 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 958320 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 1063136 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1785015 2177683 ~ 2186164 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 648968 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 721227 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 741623 4712873 ~ 4721468 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 1032298 5003548 ~ 5014516 (+)
G206166 NA other downstream 1686362 5657612 ~ 5660848 (+)

Expression


Co-expression Network