XLOC_005362 (rhoq)


Basic Information

Item Value
gene id XLOC_005362
gene name rhoq
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25110016 ~ 25150279 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010273
TGGAAAGTAGGGAAAGTGGGACAGAGGAGAGGGCGGATGGTGTCGAGCACGCGCCTTTCAGGTTCATGTCTTGACAACGCCAAGTTTATCGCTTGCTTCCTTCTCGCGGAAGCGGCACGTTGTCGGCGTGTGCCAGTATTGAAGGGGAAAACCTCAGTCAATGCCAAATTTGGGAAGCGGGGTGGAGGAAATGGCATTTCAGCTGTTTTCGCACACCGAGCGCTGCACTGCTGCTGCTGCCGCTGGTGACGCCTGGAGGGAGCTTTAATAAAGCGGGATATACCTGTGTCTAGCAGCTGAAGATGCTGAATTCAAGTGTTTTATTCTCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGTGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCCTTTCCAGAGGAATATGTGCCCACCGTCTTTGATCACTATGCAGTGAGTGTGACGGTCGGGGGGAAACAGTACCTGCTGGGGCTCTATGACACTGCGGGTCAGGAGGACTATGATCGCCTGCGACCCCTGTCCTATCCTATGACGGATGTCTTCCTCATTTGCTTCTCCGTGGTCAATCCGGCCAGCTTCCAGAATGTAAGAGAGGAATGGGTCCCTGAGCTGCAGGAATATGCACCAAACATCCCTTACCTGCTCATTGGCACTCAGATTGACCTGCGGGATGACCCCAAGACTATCGCCAAGCTCAACGACGTGAAGGAGAAGCCCATTGTGACGGAACAAGGCCAAAAGCTAGCAAAGGAGATTGGTGCCTGCTGCTATGTTGAATGCTCAGCACTAACACAGAAGGGCCTGAAGACTGTGTTTGATGAGGCCATTATAGCCATTCTGGCTCCTAAGAAAGGCGCACTGAAGCGAAGACTAGGCCCGCGCTGCATTAACTGCTGCCTCATCACATGAACCACCAGCTCAGGTGAATGAAAACAAGAACTGACGGTGACCAAACAGCAACTAACCAGATCACACTCTGACTTCTGAATGAACACAGTCACCTACAAATGAAATACCAACAATGGGGGAGTGCAGTCCAAGTTATGGACACatgacaagacaaaaaaaaaactttcatcaGGGAGAAAAGATACTACATATTAAGATTAAAAAAGTAAATGACTTCTTGAACACACAAGCACAGAGATGTCTGAGACGCCCTTTTGAATGACTAAGAATAAATCAAACTGTATGTTTGTGTCTCTTTTTGAGAGATGAAACCCAGACAAGCCTAAACAGCACAACCAAACACGGCCATTTTTACAGAAGTAGGACTTTATTtaacttccaaaaaaaaaagggaaactcAGCATCTCAAATTAGGTTGCAAAACAGTTGCTTTTtacaaaacatcttcatttaCTAGCAGGATGAGAGGAATGATCAAATAAATATACTGCCATTACGAGCAGACAACAAACTATCTGTTCTACAAAAagacaacacttttttttattggtGTAAATGTGAGTCATTTCTTTGATTCGGAGCCCGTACGGTCATTTTTTGACTTTCGTCTGGATCTCTTTCTTTGGGTTCCTGATGGCCTGTACTTCTTTTACTCACTTAAGCTTGTATGTGAGTTGTTTGCGATGCCAATGGATCCAGACGGGGGCGGCGAGGAGGCCGGTCAGAAATCCAATGGTTGCCCCAAGGGTACAAGAAATGGGCCAAACCTGGACAAAAACAAAGAGAACTGTTTGCAGGAGCACAAGCAACTGACTGCAAATTCTACAGCATCACTGTGGTGTTTTACCAACCAAATTTTGTATCCAAGACTGCTTTCTTGCTTCTTATTTTGTATGTAGAGTTTTGAGTGTCGCGTGTGTATCAGTGGCCTTGCCTCTCAGGTGTGTGCCGACTGCTTTGCATTTCAACTTTTTTGCTTCATATGATCAAGGTGATTTCAAACGTCAATtgatttttagtttattattattattatgaatttctTGCAGGCCATGCAAATGTGTGGAGTGGTCCAAGTGGTCTTTAAAGCTTCCAGCAAATTGtgagcagcaacaacaacaaaaaaacatttataaatagcaGATATATGGAATGCAAATCTAAAAGTCAATCGGCACAATGGTTTTTAATGAAACAACGTAATTGAAGATGACTTTCTGTTGATGCCCAGCGCTCAGTggatatataaaatgtaatgtaatgacttgcttcaaaatatttactgactataaaaggtttttttttct
>TCONS_00010274
CCGCGTTGGGCTCAAGAGTCAGAGGAGGTGAGACTGGGGTTGGAAAGTAGGGAAAGTGGGACAGAGGAGAGGGCGGATGGTGTCGAGCACGCGCCTTTCAGGTTCATGTCTTGACAACGCCAAGTTTATCGCTTGCTTCCTTCTCGCGGAAGCGGCACGTTGTCGGCGTGTGCCAGTATTGAAGGGGAAAACCTCAGTCAATGCCAAATTTGGGAAGCGGGGTGGAGGAAATGGCATTTCAGCTGTTTTCGCACACCGAGCGCTGCACTGCTGCTGCTGCCGCTGGTGACGCCTGGAGGGAGCTTTAATAAAGCGGGATATACCTGTGTCTAGCAGCTGAAGATGCTGAATTCAAGTGTTTTATTCTCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGTGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCCTTTCCAGAGGAATATGTGCCCACCGTCTTTGATCACTATGCAGTGAGTGTGACGGTCGGGGGGAAACAGTACCTGCTGGGGCTCTATGACACTGCGGGTCAG

Function

symbol description
rhoq Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04910 Insulin signaling pathway
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-030131-5721 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

Ensembl:

ensembl_id ENSDARG00000025953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010273 False 2256 mRNA 0.44 5 25110016 25150239
TCONS_00010274 True 572 mRNA 0.54 2 25149158 25150279

Neighbor

gene id symbol gene type direction distance location
XLOC_005361 cript coding downstream 12496 25094099 ~ 25097520 (-)
XLOC_005360 socs5a coding downstream 44100 25043156 ~ 25065916 (-)
XLOC_005359 msh2 coding downstream 181519 24906106 ~ 24928497 (-)
XLOC_005358 fbxo11a coding downstream 205072 24841719 ~ 24904944 (-)
XLOC_005357 foxn2b coding downstream 277719 24796517 ~ 24832297 (-)
XLOC_005363 cox7a2l coding upstream 47104 25197383 ~ 25201576 (-)
XLOC_005364 kcng3 coding upstream 59090 25209369 ~ 25217217 (-)
XLOC_005365 hcar1-4 coding upstream 142597 25292876 ~ 25294769 (-)
XLOC_005366 zfp36l2 coding upstream 226360 25376639 ~ 25380028 (-)
XLOC_005367 NA coding upstream 273438 25423717 ~ 25432558 (-)
XLOC_005356 NA non-coding downstream 318149 24788503 ~ 24791867 (-)
XLOC_005355 NA non-coding downstream 388690 24714386 ~ 24721326 (-)
XLOC_005354 NA non-coding downstream 808001 24280847 ~ 24302015 (-)
XLOC_005353 NA non-coding downstream 929947 24179244 ~ 24180069 (-)
XLOC_005350 NA non-coding downstream 1689706 23415226 ~ 23420310 (-)
XLOC_005369 NA non-coding upstream 735380 25885659 ~ 25887891 (-)
XLOC_005374 CR854941.1 non-coding upstream 989926 26140205 ~ 26140321 (-)
XLOC_005375 CR854941.2 non-coding upstream 1050606 26200885 ~ 26219991 (-)
XLOC_005378 NA non-coding upstream 1312027 26462306 ~ 26466782 (-)

Expression


Co-expression Network