trnar-ucu_8


Basic Information

Item Value
gene id trnar-ucu_8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 15813242 ~ 15813331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ucu_8
GGCTCTGTGGCGCAACGGATAGCGCGTTGGACTTCTAATtcaaaggttgtgggttcgagtcccaCCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_8 True 73 tRNA 0.56 2 15813242 15813331

Neighbor

gene id symbol gene type direction distance location
rnf213a rnf213 coding upstream 149553 15617283 ~ 15663689 (+)
LOC113527870 pcyt2,LOC108277112,LOC108437168,LOC107701914,LOC105013038 coding upstream 246679 15548504 ~ 15566563 (+)
mafga mafga,LOC108277048,LOC107556599,LOC107739593,LOC107729585,LOC107701907,LOC106533856 coding upstream 278962 15523093 ~ 15534280 (+)
samd9l LOC108278244 coding upstream 292675 15509927 ~ 15520567 (+)
LOC113528209 ern1,LOC107555087 coding upstream 311817 15472866 ~ 15501425 (+)
LOC113528350 LOC108259890 coding downstream 9451 15822782 ~ 15826921 (+)
LOC113528274 rab26,LOC105905286,LOC102798624,LOC100707100,LOC101484267,LOC106579017 coding downstream 587423 16400754 ~ 16494702 (+)
LOC113527936 LOC108276743 coding downstream 732310 16545641 ~ 16549914 (+)
cfap70 cfap70 coding downstream 966445 16779776 ~ 16808650 (+)
hmox2b hmox2,LOC108431933,LOC106518701,LOC108247647 coding downstream 995544 16808875 ~ 16819268 (+)
G211838 NA non-coding upstream 107241 15705749 ~ 15706001 (+)
G211543 NA non-coding upstream 324260 15486537 ~ 15488982 (+)
G211540 NA non-coding upstream 341538 15469549 ~ 15471704 (+)
LOC117598819 NA non-coding upstream 608584 15203522 ~ 15204658 (+)
G211338 NA non-coding upstream 802591 15010142 ~ 15010651 (+)
G211856 NA non-coding downstream 26441 15839772 ~ 15840000 (+)
G212033 NA non-coding downstream 333048 16146379 ~ 16148542 (+)
G212029 NA non-coding downstream 338924 16152255 ~ 16153553 (+)
G212030 NA non-coding downstream 340285 16153616 ~ 16154250 (+)
G212172 NA non-coding downstream 763092 16576423 ~ 16616678 (+)
LOC117598752 NA other upstream 821792 14988086 ~ 14991450 (+)
socs3a socs3 other upstream 1191454 14619204 ~ 14621788 (+)
zgc:158403 zgc:158403,LOC108258290,LOC108441004,LOC107718630,LOC107553678,LOC107661656,LOC107695678 other upstream 2319300 13464085 ~ 13493942 (+)
znf653 znf653,LOC104961106,LOC107553636,LOC103393609 other upstream 2367556 13435381 ~ 13445686 (+)
ndufb10 ndufb10 other upstream 3438870 12367566 ~ 12374372 (+)
G211913 NA other downstream 104886 15918217 ~ 15968759 (+)
LOC113527983 sstr5,sstr2,LOC108260271,LOC103373483,LOC107083133,LOC104918336,LOC102291375 other downstream 326999 16140330 ~ 16146326 (+)
srl srl,LOC108261333,LOC107695714,LOC107661647,LOC107718567,LOC107553668 other downstream 1273953 17087284 ~ 17113156 (+)
cenpx cenpx other downstream 1885342 17698673 ~ 17733006 (+)
LOC113528485 prkar1b,LOC107661853,LOC107653458 other downstream 2370362 18183693 ~ 18342960 (+)

Expression


Co-expression Network