LOC113542922


Basic Information

Item Value
gene id LOC113542922
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8481198 ~ 8483677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU131811
TGGTGTATAAATCCGCTGCACGACGAGGCTGGGTCTTTCCTGTTCGTCATGGCGGTGTTGCACTTCACAGCTCTGCTTAAGAGCTCTGCTTTGCCTTTTAAGCCTTATTCTTCGTTAAGAGTGCTATGATGGCTCTCTTGTCCACCACTTCTCCAGGATGAGTTCTGTGGATCACTGGTTCACTGGATTACCAGATCACTAGATCACTGTGTTAATGCAATGCTGATGTGGAGAGCTCCTTAGACGCACAACCATGGCCTGCTGAATTGAGCGGCCGAAGGCATTCCTAGCCCTTCTTACTTAAGCTGTGGCTTAGTATGGCGTTGTGCAGTAGGCGTAAGAGGAACAAGGTTAATGTTTGAGAAGCCTAACTTGCCCAATTGAAGACTGATCATTTTCTGCAAGATCAAGAAAGACTGACCTGATGGTTTCCATGTTTGTATGAAATGTCTGTGGATCATTGTAATTCAGGCCCTCAGGATGGTACTTGGGTTTTGGATGAAGTCCTTTTGCTACTTTCGAATTGTAAAAGACCTGAACATTTGAAGAATAAAGTGGAATGTCTACACTAAATTGTATAGGAATTTTGTAGCTTgcattcagttcagtttcttATTTGAAGCACTGTTTCCTGATCCTGGTTCTGCAGTAGCCCTGCCCTGTGCATTTTGGAGCAGGGGGGAAAATGTGAAGTCTGTGCATGCAATATGATCATGGTTCTCAAACACTTCAATATATGTATCATGATGTataggtttgctcacaaacAGCTGCCAATACAATTCAAAACttgaataaaaattaatttgtcTA
>XR_003404361.2
TGCGCTTCTTCGGTGGTGTATAAATCCGCTGCACGACGAGGCTGGGTCTTTCCTGTTCGTCATGGCGGTGTTGCACTTCACAGCTCTGCTTAAGAGCTCTGCTTTGCCTTTTAAGCCTTATTCTTCGTTAAGAGTGCTATGATGGCTCTCTTGTCCACCACTTCTCCAGGATGAGTTCTGTGGATCACTGGTTCACTGGATTACCAGATCACTAGATCACTGTGTTAATGCAATGCTGATGTGGAGAGCTCCTTAGACGCACAACCATGGCCTGCTGAATTGAGCGGCCGAAGGCATTCCTAGCCCTTCTTACTTAAGCTGTGGCTTAGTATGGCGTTGTGCAGTAGGCGTAAGAGGAACAAGGTTAATGTTTGAGAAGCCTAACTTGCCCAATTGAAGACTGATCATTTTCTGCAAGATCAAGAAAGACTGACCTGATGGTTTCCATGTTTGTATGAAATGTCTGTGGATCATTGTAATTCAGGCCCTCAGGATGGTACTTGGGTTTTGGATGAAGTCCTTTTGCTACTTTCGAATTGTAAAAGACCTGAACATTTGAAGAATAAAGTGGAATGTCTACACTAAATTGTATAGGAATTTTGTAGCTTgcattcagttcagtttcttATTTGAAGCACTGTTTCCTGATCCTGGTTCTGCAGTAGCCCTGCCCTGTGCATTTTGGAGCAGGGGGGAAAATGTGAAGTCTGTGCATGCAATATGATCATGGTTCTCAAACACTTCAATATATGTATCATGATGTataggtttgctcacaaacAGCTGCCAATACAATTCAAAACttgaataaaaattaatttgtcTACA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU131811 False 813 lncRNA 0.43 6 8481200 8483664
XR_003404361.2 True 828 lncRNA 0.43 6 8481198 8483677

Neighbor

gene id symbol gene type direction distance location
slbp slbp coding downstream 2244 8473671 ~ 8478954 (-)
ccdc142 ccdc142 coding downstream 8585 8462550 ~ 8472613 (-)
nkx1.2lb nkx1-1 coding downstream 85408 8392281 ~ 8395790 (-)
ergic1 ergic1,LOC107660430,LOC107679115 coding downstream 182931 8280009 ~ 8298267 (-)
npy7r npy7r,LOC108268504,LOC108436162,LOC107660446,LOC107706724,LOC107558042,LOC107712299 coding downstream 267006 8206638 ~ 8214192 (-)
fhdc2 LOC108268667 coding upstream 3159 8486836 ~ 8503034 (-)
cetn2 cetn2,LOC108436166,LOC107663123,LOC107710936 coding upstream 70889 8554566 ~ 8557276 (-)
fut11 fut11,LOC107733430,LOC107663104,LOC107689135,LOC107710942,LOC107581245 coding upstream 105663 8589340 ~ 8594245 (-)
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding upstream 118442 8602119 ~ 8612067 (-)
pcdh20 LOC108268391 coding upstream 141096 8624773 ~ 8630049 (-)
G111438 NA non-coding downstream 126186 8346968 ~ 8355012 (-)
G111414 NA non-coding downstream 166886 8314026 ~ 8314312 (-)
G111306 NA non-coding downstream 257590 8223128 ~ 8223608 (-)
G111218 NA non-coding downstream 418547 8055159 ~ 8062651 (-)
LOC117597678 NA non-coding downstream 842424 7632508 ~ 7638774 (-)
G111532 NA non-coding upstream 2413 8486090 ~ 8486321 (-)
G111548 NA non-coding upstream 73668 8557345 ~ 8557706 (-)
G111559 NA non-coding upstream 133029 8616706 ~ 8616942 (-)
LOC113542737 NA non-coding upstream 459806 8943483 ~ 9003847 (-)
G111885 gria3a,gria3b,LOC103044872,LOC107568987,LOC107663111,LOC107741597,LOC107566009 non-coding upstream 619467 9103144 ~ 9109888 (-)
LOC113542918 NA other downstream 115616 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 123252 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 542724 7911338 ~ 7938474 (-)
G110290 NA other downstream 2652640 5826230 ~ 5828558 (-)
G110204 NA other downstream 2683262 5793847 ~ 5797936 (-)
fgf16 fgf16 other upstream 856696 9340373 ~ 9347934 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 1103658 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 1475899 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 1482108 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 2774774 11258451 ~ 11325468 (-)

Expression


Co-expression Network