G111548


Basic Information

Item Value
gene id G111548
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8557345 ~ 8557706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU131843
ggctgctgggttttgctgcagaaataagaagcaagtgtgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttacagctcatttccttataaaactgaacacactgtacctgagactactatttttattttaaagcaaaggattgtcacaccaaatattgactttgtttcatttattactgtttactgctctttatagtattttttttaatgtagaaacatttagtttcattatttttgaaggcatctttgctctacagcatttctttgcatatgcctaagacttttgcacagtactgtatacatatatatatattttttttgtgcgtgtgtgtgttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131843 True 362 lncRNA 0.34 1 8557345 8557706

Neighbor

gene id symbol gene type direction distance location
cetn2 cetn2,LOC108436166,LOC107663123,LOC107710936 coding downstream 69 8554566 ~ 8557276 (-)
fhdc2 LOC108268667 coding downstream 54311 8486836 ~ 8503034 (-)
slbp slbp coding downstream 78391 8473671 ~ 8478954 (-)
ccdc142 ccdc142 coding downstream 84732 8462550 ~ 8472613 (-)
nkx1.2lb nkx1-1 coding downstream 161555 8392281 ~ 8395790 (-)
fut11 fut11,LOC107733430,LOC107663104,LOC107689135,LOC107710942,LOC107581245 coding upstream 31634 8589340 ~ 8594245 (-)
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding upstream 44413 8602119 ~ 8612067 (-)
pcdh20 LOC108268391 coding upstream 67067 8624773 ~ 8630049 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding upstream 91758 8649464 ~ 8804731 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding upstream 563328 9121034 ~ 9201135 (-)
G111532 NA non-coding downstream 71024 8486090 ~ 8486321 (-)
LOC113542922 NA non-coding downstream 73668 8481198 ~ 8483677 (-)
LOC113542949 NA non-coding downstream 74364 8482779 ~ 8482981 (-)
LOC113542950 NA non-coding downstream 75282 8481995 ~ 8482063 (-)
G111438 NA non-coding downstream 202333 8346968 ~ 8355012 (-)
G111559 NA non-coding upstream 59000 8616706 ~ 8616942 (-)
LOC113542737 NA non-coding upstream 385777 8943483 ~ 9003847 (-)
G111885 gria3a,gria3b,LOC103044872,LOC107568987,LOC107663111,LOC107741597,LOC107566009 non-coding upstream 545438 9103144 ~ 9109888 (-)
G111893 NA non-coding upstream 636195 9193901 ~ 9259335 (-)
G111896 NA non-coding upstream 681722 9239428 ~ 9251750 (-)
LOC113542918 NA other downstream 191763 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 199399 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 618871 7911338 ~ 7938474 (-)
G110290 NA other downstream 2728787 5826230 ~ 5828558 (-)
G110204 NA other downstream 2759409 5793847 ~ 5797936 (-)
fgf16 fgf16 other upstream 782667 9340373 ~ 9347934 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 1029629 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 1401870 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 1408079 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 2700745 11258451 ~ 11325468 (-)

Expression


Co-expression Network