LOC113542737


Basic Information

Item Value
gene id LOC113542737
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8943483 ~ 9003847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU132127
tatcACGGTCACGGTCTCCTGACTACTGATAACACTCACCTGTTTTCAATCACTCACATGTAAATACAGACTCCAAACAAAgcacacacgcatacatgcacacacacgcgacaTGAAATATCAAGACTTGTATCTCATGTTAAAAAATGCCAAAGCAGATGCCTTATTTCAAATGCACAAGATGGGCACCATGCTTCCAGAATCCTACTTTCCAGCTCCCATCATCTGGGAGCTCAATGAAGAGATCCACTGCCCATGCTGTACAAACTGGATACCCAGATGGTGGGCAGAGTTCCTGTTTGGACGGATGGAACCAGGCAACAAGGGCTTGTGCTGAATTACAGAGGCTCCCATGGGTGccactgatattttatttacagactGCAGTGCAAGCAAAAGTACAAGGACTAATGTTGGAACCCCAAGTTgttcagtttttctttgtttagttttgatacattttggctgtatgtttttgtataaattattattttaaacatttaaaattacagGTGAATAAAGTGTAAGTGGAGTTGCTGAGGCCAATGGGGTGGTATGCGGAGACAGAACTGTGGTATTGTTAGTGCATTATTGCATAAATTAGCTCTGGGGTGGGAATTGATTAGATCAGATGTAAACAGGATTTGAATGTGTCGTGCTGTGTTGTATGAAGTCAGCCATTGCCTGAGCCAGGTTATACATGAGTGAAAGTTTGATCAGTTTTAGagaatttttatattgttatatacatGATATTGTAATATATCTTCTCTGCTG
>XR_003404338.2
CTCCAAACAAAgcacacacgcatacatgcacacacacgcgacaTGAAATATCAAGACTTGTATCTCATgaACACAGTATCTACATTTCCAgatgaaagatacatattataGTAGAAAAGATTCTTGAAGACTCTTGGTGGTActaccccagtgacaaggaaagGCTTAACTTATAGAGTGGAGGTGGACAGAAGTTCTaacttcagtgcaaaactaaggGTTAGACTGAGATGCATTTCCAAAACACATCCCACAGATCCAGACAGACTTCTTGGCAGCATGTAGACTAACTGATCACACGCTACTGTACTAACATATATAttagtacagtgtgtgagtgtcaggCGGCAGGGATGGACACAAGTGCAGAAAACCTCTTTGGAAGAAGTGTGACGGTGGCTGCTGTGTTATCATCCACACAGGCTGACAAACCTCTCCCTAGGCCCCAAGGGGCTGACACAGATGTCCTTGTATATCTTCTGCACACAGGGCctagagagagaggagcagaaGAGTCCTCTTTGGTGTGAGAGGAGCTCTGGctgatCGTTGGTCTGCGTTTTTGACTCGGCACACTTTTTATGCCCCTCCTGATGCAACTTTCCCCAGATTTATCCGTGCTTGGGACCGACACTGAGAGCACACCACGACTGAACTGAATGTGATTAGGGCTTAATTTTAGTTTTCTAAGCATGAAGCAGTGCTGCTCTTGTAGCAAAACCTCTCTTGTGGCTTATCCAATAgcatacatttatgtaaattatttagttgAAGCCAGCTTATTGGACTGGAGACTAGCTACAAGGCTAAAGGCATTAAGTCAGAAAGGCAATAGTGTTCACAGACTTAATGCCTGCAGTATGATTAGAGAACTGATGACattgtttaaagaaaagttgacaacaaaaacaatgtttaatgaTGATTAGACAAAGAAATACTATTCTCGACTCAAAACTGTTGTATATCATCTGTTCAAAGTTGATGGCACAAGTCAAAGGTGGTAAAGCATTATTTATAGCTATGCACTATTCTTTAATGGTTCatcattaaaaggtaactgttgtcacaa
>XR_003404339.2
CAGACTCCAAACAAAgcacacacgcatacatgcacacacacgcgacaTGAAATATCAAGACTTGTATCTCATATCCAGACAGACTTCTTGGCAGCATGTAGACTAACTGATCACACGCTACTGTACTAACATATATAttagtacagtgtgtgagtgtcaggCGGCAGGGATGGACACAAGTGCAGAAAACCTCTTTGGAAGAAGTGTGACGGTGGCTGCTGTGTTATCATCCACACAGGCTGACAAACCTCTCCCTAGGCCCCAAGGGGCTGACACAGATGTCCTTGTATATCTTCTGCACACAGGGCctagagagagaggagcagaaGAGTCCTCTTTGGTGTGAGAGGAGCTCTGGctgatCGTTGGTCTGCGTTTTTGACTCGGCACACTTTTTATGCCCCTCCTGATGCAACTTTCCCCAGATTTATCCGTGCTTGGGACCGACACTGAGAGCACACCACGACTGAACTGAATGTGATTAGGGCTTAATTTTAGTTTTCTAAGCATGAAGCAGTGCTGCTCTTGTAGCAAAACCTCTCTTGTGGCTTATCCAATAgcatacatttatgtaaattatttagttgAAGCCAGCTTATTGGACTGGAGACTAGCTACAAGGCTAAAGGCATTAAGTCAGAAAGGCAATAGTGTTCACAGACTTAATGCCTGCAGTATGATTAGAGAACTGATGACattgtttaaagaaaagttgacaacaaaaacaatgtttaatgaTGATTAGACAAAGAAATACTATTCTCGACTCAAAACTGTTGTATATCATCTGTTCAAAGTTGATGGCACAAGTCAAAGGTGGTAAAGCATTATTTATAGCTATGCACTATTCTTTAATGGTTCatcattaaaaggtaactgttgtcacaa
>XR_003404340.2
CTCACCTGTTTTCAATCACTCACATGTAAATACAGACTCCAAACAAAgcacacacgcatacatgcacacacacgcgacaTGAAATATCAAGACTTGTATCTCATAAAACCTCTTTGGAAGAAGTGTGACGGTGGCTGCTGTGTTATCATCCACACAGGCTGACAAACCTCTCCCTAGGCCCCAAGGGGCTGACACAGATGTCCTTGTATATCTTCTGCACACAGGGCctagagagagaggagcagaaGAGTCCTCTTTGGTGTGAGAGGAGCTCTGGctgatCGTTGGTCTGCGTTTTTGACTCGGCACACTTTTTATGCCCCTCCTGATGCAACTTTCCCCAGATTTATCCGTGCTTGGGACCGACACTGAGAGCACACCACGACTGAACTGAATGTGATTAGGGCTTAATTTTAGTTTTCTAAGCATGAAGCAGTGCTGCTCTTGTAGCAAAACCTCTCTTGTGGCTTATCCAATAgcatacatttatgtaaattatttagttgAAGCCAGCTTATTGGACTGGAGACTAGCTACAAGGCTAAAGGCATTAAGTCAGAAAGGCAATAGTGTTCACAGACTTAATGCCTGCAGTATGATTAGAGAACTGATGACattgtttaaagaaaagttgacaacaaaaacaatgtttaatgaTGATTAGACAAAGAAATACTATTCTCGACTCAAAACTGTTGTATATCATCTGTTCAAAGTTGATGGCACAAGTCAAAGGTGGTAAAGCATTATTTATAGCTATGCACTATTCTTTAATGGTTCatcattaaaaggtaactgttgtcacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132127 False 777 lncRNA 0.40 3 8943483 9003847
XR_003404338.2 True 1072 lncRNA 0.42 6 8976406 9003777
XR_003404339.2 False 888 lncRNA 0.42 4 8976406 9003781
XR_003404340.2 False 807 lncRNA 0.41 3 8976406 9003813

Neighbor

gene id symbol gene type direction distance location
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 138752 8649464 ~ 8804731 (-)
pcdh20 LOC108268391 coding downstream 313434 8624773 ~ 8630049 (-)
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding downstream 331416 8602119 ~ 8612067 (-)
fut11 fut11,LOC107733430,LOC107663104,LOC107689135,LOC107710942,LOC107581245 coding downstream 349238 8589340 ~ 8594245 (-)
cetn2 cetn2,LOC108436166,LOC107663123,LOC107710936 coding downstream 386207 8554566 ~ 8557276 (-)
thoc2 thoc2,LOC107733416,LOC107741598 coding upstream 117187 9121034 ~ 9201135 (-)
LOC113542799 uprt,LOC108440089 coding upstream 407001 9410848 ~ 9424114 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding upstream 566267 9570114 ~ 9575347 (-)
zgc:174917 LOC108268429,LOC108440103 coding upstream 594940 9598787 ~ 9601926 (-)
si:ch211-153b23.7 LOC108269411 coding upstream 600778 9604625 ~ 9615161 (-)
G111559 NA non-coding downstream 326541 8616706 ~ 8616942 (-)
G111548 NA non-coding downstream 385777 8557345 ~ 8557706 (-)
G111532 NA non-coding downstream 457162 8486090 ~ 8486321 (-)
LOC113542922 NA non-coding downstream 459806 8481198 ~ 8483677 (-)
G111885 gria3a,gria3b,LOC103044872,LOC107568987,LOC107663111,LOC107741597,LOC107566009 non-coding upstream 99297 9103144 ~ 9109888 (-)
G111893 NA non-coding upstream 190054 9193901 ~ 9259335 (-)
G111896 NA non-coding upstream 235581 9239428 ~ 9251750 (-)
G111911 NA non-coding upstream 251875 9255722 ~ 9257981 (-)
G111913 NA non-coding upstream 255627 9259474 ~ 9259729 (-)
LOC113542918 NA other downstream 577901 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 585537 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1005009 7911338 ~ 7938474 (-)
G110290 NA other downstream 3114925 5826230 ~ 5828558 (-)
G110204 NA other downstream 3145547 5793847 ~ 5797936 (-)
fgf16 fgf16 other upstream 336526 9340373 ~ 9347934 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 583488 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 955729 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 961938 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 2254604 11258451 ~ 11325468 (-)

Expression


Co-expression Network