G111896


Basic Information

Item Value
gene id G111896
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9239428 ~ 9251750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU132230
AGCATGCTGGTATGTCCTGAGAAAGTTCAAATTCAGAAAACAGAATGTAATAtgccaaaagaaaaaataagtcATGCCAAAGTGAATAACAGTTGGCTGTGCATTTGGAAAAAAGTACCTTCACAGAGTTTGAGAAGTCTGAGAGCTGAAGCATAGGGAAAGATAGATAAAGGACAAGAGAGAGTTCCAGACATAACAACATTGGTCCATTATTTAGTAGTCAAGATAAGAACTAATCTTACAATAATAATGTCTACTGCAGGTTATGGTATGATATACAACTTAGTTATCTTAATAACTTTGCATATACACCCGGGAATGAAACGAAAAAAGGAAGTGTACTGAGTCATATAACACATCAAACTATAATCACTGGAGTTGGTAATTTTTCTAACATAACACTGCATTCTCTAAAtggaaaactgttttttaaatcaatctctccatgttctccatgttttgATGTCATACCTGAAGCCAACACAGGAGGGAGTGATATGCAACAAACATTTAACAGTGGCTGGCTGATGTACTGAGAGGGAAGGAGTGAAAggaagaataaaagagaaagggAGGAGTAGAGGCACATACAGCAAGATAAAGAGGTGGAGCATGAGAGTGCTGAAAGCATTGCTGGCTGCCAGACATCATGCTGCTTGACCTTATTGACCCGTAAAGGCTAATCCTGAGATTGGTCTATAACTCACACTGGCATCACTACACATGAGGGTGAGCAAAGATTCTTTTCATCAAGCATTAAAATGAGAGTGCACCCTATCTCTCCCATAGGAAAATTAGATACAGATTAGGGGTGTAACTGAACAGGAATACATTATTCGGACTGAACAGATAATGCGTCCTAAacgaatatgaatacagatgTGGAAAGTAAGTAGACCATTCTTTTTGAGAAAGCTTGCCAGCTTTAGGGACTAGGATcccaccagaaaaaaaaaaaagaagctgtgcATGGTTTTTAACTGTAATGCTGACCTTTAAAGAACAGCAGTGGAAGCTTGTGGACCCCAACTACAACTCGGCAATAAAGACTCGACTAACCTTTCCTGTGCCTGAACCTTTTGGGCTAGAAATATTTCTTCTCATTTCTCAGTCAGTGGTATGCATTTCATGGAACATGTCAACCCTGCTCACGAAACTTAAATAAAAAGCAGCTTTTGCTGTGCTCAGAGCTGCACATCTCTGCTGGGCTCTCCACAgaaacaataatttaattaatttttaaaaatatcgtAAAACTTCTTAAATGATCGGATTTAGGTCGTTCTCCAAAATGTCCTCAAATAATCGTTCTCCATCATTACTAAAAGGAGCTCTCAGTACATAAACAAACGGTAGTGCTGCACAAAATATCTTATTAAACTCTCAATTTATCTCAATTTATATCTCAAAgcaattcaatttaaaaaaaaaaaacagtgtaaattctgcagcatttgcacaaaaaaaagagcTCCACTATTCCTTCTTTTTCACTGTGAACAGTGACTGTACACGGTGTACCATATGACAAGAGGAGGAACTGTCAGAAAGCTAAATTGTGAGTGAATTATTAAATGATCCAAATGCCCGCTTGCAGTGAGAATGCATTTGTcctaaataatgtttaatatgtacCGAATATTAAATTCCCAAATTACTAAACAAACAATGACTGAATCTATGAAACGAATGAATGGAGCAAGTTATTTATGGCTGCATGCTCTGTCTGGCTCAAAACATTGCCAGTGATGCATTACGCTTATCAAGACCTTCACATTTTTACTGTGAGTTGCTATGTGCAGAAGAACAGAAGCTAATTATTTAACCAGTCATTTTTATCCGGGCTGCGGCAGTGAGAGCGGGAGATCCTTAGCTGCTAGCCCCCCAGGGGATAGggaatttaaataatttgttgaattacgattttatttttaaaaatcaagtaaaattattcacttttcacacttttataaaatatacCAAAATCCACAGTGAAATAATGGGTAATGGGTAAATAATGGGTAACTCATGAGAATGCTGGTATGTCCTGACAAAATACAAATTCAGAAATCAGAGCTCACAGAATGTAATAtgccaaaagaaaaaataagtcATGCCAAAGTGAATAACAGTTGGCTGTGCATTTGGAAAAAAGTACCTTCACAGAGTTTGAGAAGTTTGAGAGCTGAAgcatagagaaagaaagataaaggaTAAGAGAGAGTTCCAGACACAACAACACTGGTCCATTATTCAGTAGTCAAGATCCATGTCAGTGGAATGTTTCTCATATTTTAAACCTACATCTTTATCAGATGCAGCGTGTATCAGCATCCTTATTATGTTTCTCGTTTCTGATGTTACCCATGACCTCATAAGTAAAAGTTTCTCCACTGATAAGAATAAGAGAAGGAGTTTATTACTATCATAACTTCATAACCCACTGTGAGGGAGTTTGTTGAATAATATGTTGaattatgattttattaaacTACTACTTTTTCATGTCATTCTGGACAAATATTGTTTACAGGTGCCTGTAATGACTGACTGGTTTACCTTAATATCGGAGCTGAAGTTGTTGATTTTCTGCCAGCCGGCGTTGTGCAGATGGAAGTTTGCCCATCGCAGGAGCAACTCCTCTGGGGAAAGTTTCATCAGATCCTCCAGAGTCTCACCTTCCCGGAGCAATGCTGCCAGTGCTGggaaagcacacacatgcacatgagtCAGCACAattatgtaaacacacaactTAAACACAACCAGCAGGCTGAAGGAGCTGTGTATGTATAAACATAAAATAGGTAAAACATCAACATAATAGTTTTCTACAGCATCCCAGAACAtgaatgttatattattatctgctattttaatactttatatatacacacatcattatCACTTTTTCTTTACTTATACTAATCTTCTTGCACACAACCATTGTTcttgatttttttgcattcctTGTCTTCGTTTGAATGTATGTAATCTGACATACGAACTGGGGTAATCTAACACAGTACCGTGTCAGTGTGATCAaatttacactgtttatacagAATTATATGAGCGCATTCTTAGACTACTGGATGCCCTGCAACAACACAGATTAATATATGCTTCTCCACCAAGTAACCTAGCCCCACCCTGAGAAGAGTGCAGGTTTGACTCCAATCCTGCAAACCATGCATTACTGCACATGTTGTACTTAATGCAAAGCTGAAGCCTTCCCTTTCAATCAGCAAATCAGATAGAGCAAGCTTGTCTGAAATCAATTTATCCTAAGTATGTGTCCTGCAGCATTGATCAAATTCTTCCTTGTATTTAATCATTTCCTCCTACACAGAGACACTGTTTGTCTGAATTCCTGGCCAGTGGCATCAGCCTGCTTTGCTTCTGAATGGTGTCAGTTTCTGGTCACCGGGGGAAATAGAGCTCACCCTCATTCCTGCTGAGCTCGATGTCTGCAAAGAGGCCGATCTTGATGATCTGCCACAACAGGCCCAGCACCAGATGCGGCTTTCCTTCACGCAGATCCAGAGCGCCGATGTTCACCACGTGGCAGCCAATGGCTGAAGCAGAGTTCAGCGCCAGGTTGAGGTTCTCCTGTTGTGAATGGTGTCAGTTTCTTCTTGTTTATTGTTCTCTCGTCAATTGTATCGGGGACAGACAGGTTGATCATTTTACTGCACGATGCCATCACCTACAGCCTTGAAGAGGTCGTTTGTGTTGGGGTTCATGGGCAGCACATGCTTGCAGTCCAGGTCTTTCTCCAATGCAGAATTGATCCAGTTCACAAAAGCAAACCTCTCCTCCTCTGgatcacacaaaaaaaattatgaagaaaaaaattatacacaagAGGACACACAAAAGGTCACTCGTTTTCAGCTCAGCCAACCAAACAATGTTCCAAATATCTTCAAGAGGCCAAAGACACACAGTTCTTCTCTAGTACTCAGACATCAAATCTAAAGGTCACATAAAATTATCTAGAAAAGTTAGCTAtctaatgctacagcataagTGTAGTATTCAGTATAAACAAGTCTGcttagctttattttaaaaagacaagaGGTTTCACCTGAGTAGGAGTGCTGTGTGCCTGCACTGGACAGTTCTGATGTGCCCCCGATGGCCAGGATGCCCTCTTTCTTGTTGATAGCATTACGGAAGGTCTTTGCAATATCACTACTTTTAAGCTCTTGGAAGATGAAACAAATTCATCGAAGCTGATCTTGTTGTCCTTGTCTTTGTCCCCCTCGGTCATCAGCTTCTGGATGATCTCGCGGACTTTGTACCCAGGAAGGGGCAGGTTGGCCTCTTTGAACAGGTCGTGGAGCTCGTAGTCATTAATGTAGCCATTACTGTCCAGATCCGACTTTCCCGAAGGCTTCACGCAGCTCCTCCAGCTCGTCTTTGGATATCTTCGCTGCCATCTCCCTGGAGAACGACCTGTACCTTCCTCACTCCAACAATGTGCCTTTTTTCCTGTGGTGCGAATGGCTGCAGAGGTTGAGGCAGAGGCAGTGCTCCCTCCACACCCTCCGAGGCGAATGTGGAGCGCCAGCATTCCTGTCTGCCTCACAAAGACCTCAGGCAGCAAGTCAGAACACTTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132230 True 4630 lncRNA 0.40 6 9239428 9251750

Neighbor

gene id symbol gene type direction distance location
thoc2 thoc2,LOC107733416,LOC107741598 coding downstream 38293 9121034 ~ 9201135 (-)
nlgn3a nlgn3,nlgn3a,LOC107748936,LOC107689138,LOC107663109 coding downstream 434697 8649464 ~ 8804731 (-)
pcdh20 LOC108268391 coding downstream 609379 8624773 ~ 8630049 (-)
plp1a plp1,LOC105925114,LOC108242072,LOC107689137 coding downstream 627361 8602119 ~ 8612067 (-)
fut11 fut11,LOC107733430,LOC107663104,LOC107689135,LOC107710942,LOC107581245 coding downstream 645183 8589340 ~ 8594245 (-)
LOC113542799 uprt,LOC108440089 coding upstream 159098 9410848 ~ 9424114 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding upstream 318364 9570114 ~ 9575347 (-)
zgc:174917 LOC108268429,LOC108440103 coding upstream 347037 9598787 ~ 9601926 (-)
si:ch211-153b23.7 LOC108269411 coding upstream 352875 9604625 ~ 9615161 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding upstream 654208 9905958 ~ 9917165 (-)
G111885 gria3a,gria3b,LOC103044872,LOC107568987,LOC107663111,LOC107741597,LOC107566009 non-coding downstream 129540 9103144 ~ 9109888 (-)
LOC113542737 NA non-coding downstream 235581 8943483 ~ 9003847 (-)
G111559 NA non-coding downstream 622486 8616706 ~ 8616942 (-)
G111548 NA non-coding downstream 681722 8557345 ~ 8557706 (-)
G111532 NA non-coding downstream 753107 8486090 ~ 8486321 (-)
G111911 NA non-coding upstream 3972 9255722 ~ 9257981 (-)
G111913 NA non-coding upstream 7724 9259474 ~ 9259729 (-)
G111939 NA non-coding upstream 86124 9337874 ~ 9338326 (-)
G112026 NA non-coding upstream 148604 9400354 ~ 9400579 (-)
LOC113542930 NA non-coding upstream 229506 9481256 ~ 9487069 (-)
LOC113542918 NA other downstream 873846 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 881482 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 1300954 7911338 ~ 7938474 (-)
G110290 NA other downstream 3410870 5826230 ~ 5828558 (-)
G110204 NA other downstream 3441492 5793847 ~ 5797936 (-)
fgf16 fgf16 other upstream 88623 9340373 ~ 9347934 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other upstream 335585 9587335 ~ 9593325 (-)
tmsb1 NA other upstream 707826 9959576 ~ 9964000 (-)
LOC113542827 slc25a53 other upstream 714035 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 2006701 11258451 ~ 11325468 (-)

Expression


Co-expression Network