tmsb1


Basic Information

Item Value
gene id tmsb1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9959576 ~ 9964000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU132856
CAGAACGGGGCGTGATTTCCTACTTAAACCGCTAGGCTTCTGCGGATTAAACACATACacgcacaaacgcacacacagagcttcCGTTAAAGACAACTCGAGGACACTTTCAGAACATCCAAAATGAGTGACAACCCAGTCAAGCAGGAGGTGCAGAACTTCGACAAGAGGTGTCTAAAAAAGACCAGCACCGAGGAGAAAAACACTCTTCCAACAAAGGAGGACATTGAACAAGAAAAGAAGGCTGCAGAGGCCGGAAAATGAAGCCCGTCGGCAATGATCCTTCGCGTATCTCTTTATCTAACACCCCCACCCTTTCCTTTCtccattttaagacattttactCGATCACCCTCTTCACCTCCTGCACTCCAAACCCTTGTTTAAATCATATCACAGTCTCTTCACAGTGCCACAGGCAAAGAGACATGCACCTGAAGGGGCAGATGAGTGGTAAAATCCTGTGTAATTACACCtatgcatatttttaaacttttttttttttttctattttgcattcctGAGAGTGGACTAAGGTGGCATTGGAGCAGCTGAGCAATCAAAAACAAGTGTGCATGTCATC
>XM_026940603.2
GGGTTTAGCATAGCGCTCGCGCAGAACGGGGCGTGATTTCCTACTTAAACCGCTAGGCTTCTGCGGATTAAACACATACacgcacaaacgcacacacagagcttcCGTTAAAGACAACTCGAGGACACTTTCAGAACATCCAAAATGAGTGACAACCCAGTCAAGCAGGAGGTGCAGAACTTCGACAAGAGGTGTCTAAAAAAGACCAGCACCGAGGAGAAAAACACTCTTCCAACAAAGGAGGACATTGAACAAGAAAAGAAGGCTGCAGAGGCCGGAAAATGAAGCCCGTCGGCAATGATCCTTCGCGTATCTCTTTATCTAACACCCCCACCCTTTCCTTTCtccattttaagacattttactCGATCACCCTCTTCACCTCCTGCACTCCAAACCCTTGTTTAAATCATATCACAGTCTCTTCACAGTGCCACAGGCAAAGAGACATGCACCTGAAGGGGCAGATGAGTGGTAAAATCCTGTGTAATTACACCtatgcatatttttaaacttttttttttttttctattttgcattcctGAGAGTGGACTAAGGTGGCATTGGAGCAGCTGAGCAATCAAAAACAAGTGTGCATGTCATCAGTCAGTAACTCTGTCATCTATGCCTATGTCTCTGTATCTGGTAACATTCATTATGAGTTATCCAG

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132856 False 583 lncRNA 0.44 3 9959642 9963979
XM_026940603.2 True 670 mRNA 0.44 3 9959576 9964000

Neighbor

gene id symbol gene type direction distance location
zgc:66447 LOC108268886 coding downstream 13050 9918373 ~ 9946526 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding downstream 42411 9905958 ~ 9917165 (-)
si:ch211-153b23.7 LOC108269411 coding downstream 344415 9604625 ~ 9615161 (-)
zgc:174917 LOC108268429,LOC108440103 coding downstream 357650 9598787 ~ 9601926 (-)
irg1l irg1l,LOC108269388,LOC108440101,LOC107570155,LOC107746176,LOC107573956,LOC107663091,LOC107661550,LOC107746319 coding downstream 384229 9570114 ~ 9575347 (-)
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding upstream 17134 9981134 ~ 9992732 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding upstream 108171 10072171 ~ 10075615 (-)
sybl1 vamp7 coding upstream 129796 10093796 ~ 10105232 (-)
LOC113542803 LOC108268917,LOC108443108,LOC103043510,LOC103366846,LOC106530016,LOC103470946 coding upstream 156276 10120276 ~ 10130316 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding upstream 194692 10158692 ~ 10171970 (-)
G112161 NA non-coding downstream 253344 9705937 ~ 9706232 (-)
G112144 NA non-coding downstream 405898 9553026 ~ 9553678 (-)
G112141 NA non-coding downstream 408524 9550812 ~ 9551052 (-)
LOC113542930 NA non-coding downstream 472507 9481256 ~ 9487069 (-)
G112026 NA non-coding downstream 558997 9400354 ~ 9400579 (-)
G112454 NA non-coding upstream 707 9964707 ~ 9965338 (-)
G112459 NA non-coding upstream 6377 9970377 ~ 9970649 (-)
G112473 NA non-coding upstream 38779 10002779 ~ 10002992 (-)
G112569 NA non-coding upstream 259944 10223944 ~ 10224651 (-)
LOC117597733 NA non-coding upstream 270819 10234819 ~ 10241509 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 366251 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 611642 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1593994 8362373 ~ 8365582 (-)
LOC113542919 NA other downstream 1601630 8356254 ~ 8357946 (-)
canx canx,LOC107733432,LOC107667459 other downstream 2021102 7911338 ~ 7938474 (-)
LOC113542827 slc25a53 other upstream 1785 9965785 ~ 9973795 (-)
LOC113542749 LOC108269078 other upstream 1294451 11258451 ~ 11325468 (-)
G113398 NA other upstream 1395138 11359138 ~ 11359579 (-)
G113516 NA other upstream 1647973 11611973 ~ 11612569 (-)
G113674 NA other upstream 1854878 11818878 ~ 11858016 (-)

Expression


Co-expression Network