G112473


Basic Information

Item Value
gene id G112473
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10002779 ~ 10002992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU132886
TTGCTCAACGCCAACACTTGACCTTCTCTCTGCTAGCCCTATGCCCCCACAATAAAGGAACAATTTCCTGGTTTAAAACAAAGTCCCCTTTTGGCATGTAGCATCCAGGAAGCAATAAATTTCTGAGAACGTCCAGAAGCACAGTGCTTGGTATTATAATGTAAACTGTGAGCCTTCAATGGAATAATTTAGGCCATCTGAGGCAAACTGTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132886 True 214 lncRNA 0.43 1 10002779 10002992

Neighbor

gene id symbol gene type direction distance location
prps1b prps1,prps1b,LOC108413289,LOC103391169,LOC107746314,LOC107684920,LOC104923196 coding downstream 10047 9981134 ~ 9992732 (-)
zgc:66447 LOC108268886 coding downstream 56253 9918373 ~ 9946526 (-)
znf711 znf711,LOC107684921,LOC107569605,LOC107746145 coding downstream 85614 9905958 ~ 9917165 (-)
si:ch211-153b23.7 LOC108269411 coding downstream 387618 9604625 ~ 9615161 (-)
zgc:174917 LOC108268429,LOC108440103 coding downstream 400853 9598787 ~ 9601926 (-)
rhogd rhog,LOC108269394,LOC108443105,LOC103045046,LOC107573550,LOC104923191 coding upstream 69179 10072171 ~ 10075615 (-)
sybl1 vamp7 coding upstream 90804 10093796 ~ 10105232 (-)
LOC113542803 LOC108268917,LOC108443108,LOC103043510,LOC103366846,LOC106530016,LOC103470946 coding upstream 117284 10120276 ~ 10130316 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding upstream 155700 10158692 ~ 10171970 (-)
LOC113542752 LOC108269204 coding upstream 172656 10175648 ~ 10223540 (-)
G112459 NA non-coding downstream 32130 9970377 ~ 9970649 (-)
G112454 NA non-coding downstream 37441 9964707 ~ 9965338 (-)
G112161 NA non-coding downstream 296547 9705937 ~ 9706232 (-)
G112144 NA non-coding downstream 449101 9553026 ~ 9553678 (-)
G112141 NA non-coding downstream 451727 9550812 ~ 9551052 (-)
G112569 NA non-coding upstream 220952 10223944 ~ 10224651 (-)
LOC117597733 NA non-coding upstream 231827 10234819 ~ 10241509 (-)
G112651 NA non-coding upstream 350713 10353705 ~ 10353904 (-)
G112689 NA non-coding upstream 442657 10445649 ~ 10445952 (-)
G112690 NA non-coding upstream 445407 10448399 ~ 10448613 (-)
LOC113542827 slc25a53 other downstream 28984 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 38779 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 409454 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 654845 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1637197 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 1255459 11258451 ~ 11325468 (-)
G113398 NA other upstream 1356146 11359138 ~ 11359579 (-)
G113516 NA other upstream 1608981 11611973 ~ 11612569 (-)
G113674 NA other upstream 1815886 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 2076532 12079524 ~ 12112216 (-)

Expression


Co-expression Network