G112651


Basic Information

Item Value
gene id G112651
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10353705 ~ 10353904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133096
gtgaaaagcagctcagttgggttgaggtcaggtgactgactcggccatttaagaacatttaatttccaagctcttgggctgctttcacagtatgttttgggttgttatccatctgtactgtgaagcgctgtcctatcagttttgcagcatttgaatgaatctgagcagaaagtatagctctgtacacttcagaattcatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133096 True 200 lncRNA 0.43 1 10353705 10353904

Neighbor

gene id symbol gene type direction distance location
LOC113542757 itm2a coding downstream 19165 10326781 ~ 10334540 (-)
cysltr1 cysltr1 coding downstream 120234 10225121 ~ 10233471 (-)
LOC113542752 LOC108269204 coding downstream 130165 10175648 ~ 10223540 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding downstream 181735 10158692 ~ 10171970 (-)
LOC113542803 LOC108268917,LOC108443108,LOC103043510,LOC103366846,LOC106530016,LOC103470946 coding downstream 223389 10120276 ~ 10130316 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding upstream 30407 10384311 ~ 10397034 (-)
hmgn6 hmgn5 coding upstream 104919 10458823 ~ 10462934 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding upstream 272636 10626540 ~ 10662608 (-)
hdx hdx coding upstream 312412 10666316 ~ 10701963 (-)
LOC113542771 tenm1 coding upstream 546117 10900021 ~ 11041414 (-)
LOC117597733 NA non-coding downstream 112196 10234819 ~ 10241509 (-)
G112569 NA non-coding downstream 129054 10223944 ~ 10224651 (-)
G112473 NA non-coding downstream 350713 10002779 ~ 10002992 (-)
G112459 NA non-coding downstream 383056 9970377 ~ 9970649 (-)
G112454 NA non-coding downstream 388367 9964707 ~ 9965338 (-)
G112689 NA non-coding upstream 91745 10445649 ~ 10445952 (-)
G112690 NA non-coding upstream 94495 10448399 ~ 10448613 (-)
G112691 NA non-coding upstream 94751 10448655 ~ 10448962 (-)
G112745 NA non-coding upstream 141394 10495298 ~ 10506943 (-)
LOC113542794 NA non-coding upstream 461844 10815748 ~ 10843262 (-)
LOC113542827 slc25a53 other downstream 379910 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 389705 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 760380 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1005771 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 1988123 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 904547 11258451 ~ 11325468 (-)
G113398 NA other upstream 1005234 11359138 ~ 11359579 (-)
G113516 NA other upstream 1258069 11611973 ~ 11612569 (-)
G113674 NA other upstream 1464974 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1725620 12079524 ~ 12112216 (-)

Expression


Co-expression Network