G112689


Basic Information

Item Value
gene id G112689
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10445649 ~ 10445952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133142
TGAGACTACTGAgacatgctaataataataggccactgtcataaatgtttatgttcatggcagcacaatcagaaaaagactaaacaagtatggctttcatggaagcatggctaggaaaaagccacttctctccaaaaagaatatggcagcattacttaggtttgcaaaattgcatctgaacaaaccacaaaggTTCTgaaacaatatcctttggactgatgagaccaaggtggagatgtttggtcatcatgcacagcaccatgtttggcgaaaaccaaacacagcatatcgccacaaacacctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133142 True 304 lncRNA 0.40 1 10445649 10445952

Neighbor

gene id symbol gene type direction distance location
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 48615 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 111109 10326781 ~ 10334540 (-)
cysltr1 cysltr1 coding downstream 212178 10225121 ~ 10233471 (-)
LOC113542752 LOC108269204 coding downstream 222109 10175648 ~ 10223540 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding downstream 273679 10158692 ~ 10171970 (-)
hmgn6 hmgn5 coding upstream 12871 10458823 ~ 10462934 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding upstream 180588 10626540 ~ 10662608 (-)
hdx hdx coding upstream 220364 10666316 ~ 10701963 (-)
LOC113542771 tenm1 coding upstream 454069 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 645745 11091697 ~ 11099390 (-)
G112651 NA non-coding downstream 91745 10353705 ~ 10353904 (-)
LOC117597733 NA non-coding downstream 204140 10234819 ~ 10241509 (-)
G112569 NA non-coding downstream 220998 10223944 ~ 10224651 (-)
G112473 NA non-coding downstream 442657 10002779 ~ 10002992 (-)
G112459 NA non-coding downstream 475000 9970377 ~ 9970649 (-)
G112690 NA non-coding upstream 2447 10448399 ~ 10448613 (-)
G112691 NA non-coding upstream 2703 10448655 ~ 10448962 (-)
G112745 NA non-coding upstream 49346 10495298 ~ 10506943 (-)
LOC113542794 NA non-coding upstream 369796 10815748 ~ 10843262 (-)
G112962 NA non-coding upstream 408947 10854899 ~ 10856847 (-)
LOC113542827 slc25a53 other downstream 471854 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 481649 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 852324 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1097715 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2080067 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 812499 11258451 ~ 11325468 (-)
G113398 NA other upstream 913186 11359138 ~ 11359579 (-)
G113516 NA other upstream 1166021 11611973 ~ 11612569 (-)
G113674 NA other upstream 1372926 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1633572 12079524 ~ 12112216 (-)

Expression


Co-expression Network