G112690


Basic Information

Item Value
gene id G112690
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10448399 ~ 10448613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133143
cctgacctcaacccgatagaacacctttgggatgaattagagcggagactgcgagccaggccttcttgtccaacatcagtacctgacctcacaaatgcgattctagaagaatggtcaaaaattcccataaacacactcctaaaccttgtggaaagccctcccagaagagttgaagctgttatagctgcaaagggtggaccaactccatattaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133143 True 215 lncRNA 0.47 1 10448399 10448613

Neighbor

gene id symbol gene type direction distance location
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 51365 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 113859 10326781 ~ 10334540 (-)
cysltr1 cysltr1 coding downstream 214928 10225121 ~ 10233471 (-)
LOC113542752 LOC108269204 coding downstream 224859 10175648 ~ 10223540 (-)
rraga LOC108268916,LOC103366304,LOC105906309,LOC100704732,LOC107386560,LOC102229095,LOC101162152,LOC105927798 coding downstream 276429 10158692 ~ 10171970 (-)
hmgn6 hmgn5 coding upstream 10210 10458823 ~ 10462934 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding upstream 177927 10626540 ~ 10662608 (-)
hdx hdx coding upstream 217703 10666316 ~ 10701963 (-)
LOC113542771 tenm1 coding upstream 451408 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 643084 11091697 ~ 11099390 (-)
G112689 NA non-coding downstream 2447 10445649 ~ 10445952 (-)
G112651 NA non-coding downstream 94495 10353705 ~ 10353904 (-)
LOC117597733 NA non-coding downstream 206890 10234819 ~ 10241509 (-)
G112569 NA non-coding downstream 223748 10223944 ~ 10224651 (-)
G112473 NA non-coding downstream 445407 10002779 ~ 10002992 (-)
G112691 NA non-coding upstream 42 10448655 ~ 10448962 (-)
G112745 NA non-coding upstream 46685 10495298 ~ 10506943 (-)
LOC113542794 NA non-coding upstream 367135 10815748 ~ 10843262 (-)
G112962 NA non-coding upstream 406286 10854899 ~ 10856847 (-)
G112963 NA non-coding upstream 408370 10856983 ~ 10857542 (-)
LOC113542827 slc25a53 other downstream 474604 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 484399 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 855074 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1100465 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2082817 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 809838 11258451 ~ 11325468 (-)
G113398 NA other upstream 910525 11359138 ~ 11359579 (-)
G113516 NA other upstream 1163360 11611973 ~ 11612569 (-)
G113674 NA other upstream 1370265 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1630911 12079524 ~ 12112216 (-)

Expression


Co-expression Network