LOC113542794


Basic Information

Item Value
gene id LOC113542794
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10815748 ~ 10843262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133421
CTTACTCATGCTGTAGACGCGCAGAGAagcaaatcccagcaccacagGCACAGCCACTACCTTCACCACCTGAAAAGCACATTTGAaagaactggaacgctgactgtgGCTAACTGCAAAACAAGTGAATGTTCAGAAGAAATCATGGAACAAAAGATGCCAGTTAATCAAATGGAGGAGTAGGTGCTGATTGGTAATAAGGGGTGGCCGCTCGTGGATGGGGTTCAGGATGCCGTACATTCTGACCCTGGTGCTGGCTCCTCCAAGCAAGTGACATTGGGTTTTTTCACAACCTGACCCAAAATCTGCCTCTACCTCCATGGGTTACAGAAGGAATGTGAACAAGGT
>XR_003404353.2
CACTACCTTCACCACCTGAAAAGCACATTTGAaagaactggaacgctgactgtgGCTAACTGCAAAACAAGTGAATGTTCAGAAGAAATCATGGAACAAAAGATGCCAGTTAATCAAATGGAGGAGTAGGTGCTGATTGGTAATAAGGGGTGGCCGCTCGTGGATGGGGTTCAGGATGCCGTACATTCTGACCCTGGTGCTGGCTCCTCCAAGCAAGTGACATTGGGTTTTTTCACAACCTGACCCAAAATCTGCCTCTACCTCCATGGGTTACAGAAGGAATGTGAACAAGgTGGAAACAGACTCTGTCTGGGCCCTTTATAAAAGGACCCTGGAACTAGACTCCACACTAAAGGAGTTGGATTGTGAGCCCCTCTGTGCACTCCTGGGCACCATCTCATGATGCCGCGGGAGACTCTGGCTACGCTGCTTTTGAGTTGTGCAACATGCCTTCATTTCCTTGTCC
>XR_004578450.1
CACTACCTTCACCACCTGAAAAGCACATTTGAaagaactggaacgctgactgtgGCTAACTGCAAAACAAGTGAATGTTCAGAAGAAATCATGGAACAAAAGATGCCAGTTAATCAAATGGAGGAGTAGGTGCTGATTGGTAATAAGGGGTGGCCGCTCGTGGATGGGGTTCAGGATGCCGTACATTCTGACCCTGGTGCTGGCTCCTCCAAGCAAGTGACATTGGGTTTTTTCACAACCTGACCCAAAATCTGCCTCTACCTCCATGGGTTACAGAAGGAATGTGAACAAGgTGGAAACAGACTCTGTCTGGGCCCTTTATAAAAGGACCCTGGAACTAGACTCCACACTAAAGGAGTTGGATTGTGAGACAAAGGACATAAGAAGAACTGGGGATTCACAGAAAAGAGCTGGCCATTTCTCCATGAGGTCTTTGACAGCAGGGTAGCGCTTAACGACTTCTAATCATCAATATGAGAAGTCTTGAAGTCTTGAATGAAGTCTTCTCCATTATATCACCAATGACcttattgttgtttttcttcttctgaatTTCTTTGAGTAGCACAACTCTCTCCTTCTCTAAAGTTACTTCAGTTTCCCCAAATGGAAATGGCGGCAAGTGGTTTACTTCAGCCTTCCTGGGCTTTTTCATGCCTATGGGGTGAGACTTTTCATTTGTGAACTTTGTTTTCAAACAGTTAACCTCCAGCTCTGGACAAGAAAGTTTCCTGCCTCTTAATTTTGCTCGATAATTGCCCACCTTATATTTGATCCTCTGTTGCACTTTTCGATTAAGATGTCTACTACATTCATAATTTGGATACTTTTTGGGTATAGCTATCGTTATAGTTACATAgttatatgtacatacatagtTATAGTTATGTAGCActcatatttacattaaactTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133421 False 348 lncRNA 0.48 3 10837420 10843262
XR_003404353.2 False 466 lncRNA 0.49 5 10815748 10843208
XR_004578450.1 True 919 lncRNA 0.41 5 10836581 10843208

Neighbor

gene id symbol gene type direction distance location
hdx hdx coding downstream 113785 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 153140 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 352814 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 418714 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 481208 10326781 ~ 10334540 (-)
LOC113542771 tenm1 coding upstream 56759 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 248435 11091697 ~ 11099390 (-)
asb12b asb12 coding upstream 524932 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 545240 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 638629 11481891 ~ 11543724 (-)
G112745 NA non-coding downstream 308805 10495298 ~ 10506943 (-)
G112691 NA non-coding downstream 366786 10448655 ~ 10448962 (-)
G112690 NA non-coding downstream 367135 10448399 ~ 10448613 (-)
G112689 NA non-coding downstream 369796 10445649 ~ 10445952 (-)
G112651 NA non-coding downstream 461844 10353705 ~ 10353904 (-)
G112962 NA non-coding upstream 11637 10854899 ~ 10856847 (-)
G112963 NA non-coding upstream 13721 10856983 ~ 10857542 (-)
G112964 NA non-coding upstream 14378 10857640 ~ 10859416 (-)
G112967 NA non-coding upstream 16518 10859780 ~ 10859996 (-)
G112968 NA non-coding upstream 18464 10861726 ~ 10861943 (-)
LOC113542827 slc25a53 other downstream 841953 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 851748 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1222423 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1467814 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2450166 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 415189 11258451 ~ 11325468 (-)
G113398 NA other upstream 515876 11359138 ~ 11359579 (-)
G113516 NA other upstream 768711 11611973 ~ 11612569 (-)
G113674 NA other upstream 975616 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1236262 12079524 ~ 12112216 (-)

Expression


Co-expression Network