G112962


Basic Information

Item Value
gene id G112962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10854899 ~ 10856847 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133447
aaaaaaaaaaaaaaaaaaacaccttagaaaatgacaccttttgtttggacccacccatttttttaagtgataaaatatattgtaacatgtgactgacaggtgtttcttattgcccaggtgtgccctgttaaattgattgtttaaaagattaatagctctgaatatctacttTTGTCTACTCTTGGTTAAAAAGGATAGACCAACATGTAGACCAGAAAGCTGTCTATAGGAGACATTTTGAaggaagaaagagggaaaagtcaatcagagccattgcacaagcatttgGCATAGCCAAGAAAACAATCTGTaatgtgctgaaaaagaaagaaaccactggtgtaagAACAACCAGACATAAAACAGGTTGGCCAAAGCAAAAATGAGATGAAACTTAAAAGGATCTTTCAAGACATAATTTTGAGGTGTCTGCCAAGTTTGTtgtgaaaataatatataaagtgtTCCCGAGCTATAACTaaagtcgtggcctaatggatagggagtcggacttgcaacccgaaggtgaacctgaaggccgttggttcaagtctcaggtccggcagggattgtaggtggtaGGAGTGAATGACtagtgctctctcccaccctcagtaccacgactgaggtgagacccttgagcaaggcaccaaaccccccaACTGCTCCacgggcgccacagcaaaaaaaggttgcccactgctccgtgtgtgtgtgtgcacttagatgggttaaatgcagagcacaaatGCATAATGGTGGAAATTTAGAAATAGTGGATGGAAAATTTTGGCATTGACATAACATGTCAGAAATCAGATGACACCAGAATTATGAATTTATAATGTCATGGGATCCGCCAAAATCGGCATGAGCCAAGGattaattaaaaggaaaatttTGCTTGTACCTcaaatggttcaaaagttatacACAAAAATCTTGAAATTTGACCCAATGGTGGCGCTAGAGGCATTGCGGTCCAGAGCAAAAAACTGGCGAAATGACTATGGGCACTATGcgcaatcagtgtgccaaatttcacaactttttccCCATACAGATGTAGGGTCCTCCATAGACTTCCAGCATAGAAGAATAATAAGAAcaccacaaacaaaaacaaaattgtttCAGCACCTTCACTGCTTGACCcctaaatatcaggaaattaaatctgaaattctgatccattgTCTCCTGTTCATCTTTTGGTCTCAACCCCAACTGCCTtaagtgtatagcaaaaacaaaagaattggttTGCTGTTCCAacactttcggaggggactgtataagGTGGGCTCTGTGCCACCTTCCCCTTCGGACAAGCTGCCGCTGCTTACAGTTGTGACTAACAAACCTCCTTGGGTAACAAACTGCAAGCAAGCGGTCTATTCTTAAAGGACACATTATACAGACTTCAATATTGACCTGGGTtcagttatttatatttgtacatcactcattaattaataacaacaaaataaatgatttcttATTTAACAACTTCAGTgtcattttaacagttaaatcaTCTGGTTCATTTTCAGCAGTGTATGGGGATAACAAATACAACTGACAATATTTCCAGcaataaatgctgcaaaatatGTCACACATCTCGAACATCAGCACTGACTATTACTATGTCTGTTAATAGAATTAAACTTTCATAAATCACATCCTTACCAAGTTCCTAAAGCAGATTTGAGTacagagtgaatgaatgagtgaatgatctgctgaatgagtgaataaatgaatgaatggtctGCTCTGCCATTGCTCTGTTCAGCTGCGCGTGCTGTAAAGGTCAGCGTCTTCTGGGTAAGACTGTCCAAAGTCCATTAGTTTGAGATGTGATTCATGCTCCTGCTTCTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133447 True 1887 lncRNA 0.40 2 10854899 10856847

Neighbor

gene id symbol gene type direction distance location
hdx hdx coding downstream 152936 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 192291 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 391965 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 457865 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 520359 10326781 ~ 10334540 (-)
LOC113542771 tenm1 coding upstream 43174 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 234850 11091697 ~ 11099390 (-)
asb12b asb12 coding upstream 511347 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 531655 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 625044 11481891 ~ 11543724 (-)
LOC113542794 NA non-coding downstream 11637 10815748 ~ 10843262 (-)
G112745 NA non-coding downstream 347956 10495298 ~ 10506943 (-)
G112691 NA non-coding downstream 405937 10448655 ~ 10448962 (-)
G112690 NA non-coding downstream 406286 10448399 ~ 10448613 (-)
G112689 NA non-coding downstream 408947 10445649 ~ 10445952 (-)
G112963 NA non-coding upstream 136 10856983 ~ 10857542 (-)
G112964 NA non-coding upstream 793 10857640 ~ 10859416 (-)
G112967 NA non-coding upstream 2933 10859780 ~ 10859996 (-)
G112968 NA non-coding upstream 4879 10861726 ~ 10861943 (-)
G113195 NA non-coding upstream 86205 10943052 ~ 11019852 (-)
LOC113542827 slc25a53 other downstream 881104 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 890899 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1261574 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1506965 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2489317 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 401604 11258451 ~ 11325468 (-)
G113398 NA other upstream 502291 11359138 ~ 11359579 (-)
G113516 NA other upstream 755126 11611973 ~ 11612569 (-)
G113674 NA other upstream 962031 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1222677 12079524 ~ 12112216 (-)

Expression


Co-expression Network