G112963


Basic Information

Item Value
gene id G112963
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10856983 ~ 10857542 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133457
acaatttccAGGTCACTATTTCAATTTAAGGAAATTTGTATAAGgaaactgctttgtacaaaaggtcagattctCAGTGGGTCAGATGACACTGATGGATTTGCTCTAacatggatcataaggttttgcccaaacttgtggagttcatgccagctcaagtgcacactagcagtaaagcaaaaaaggggacatactaaaaactaaaaaaattctgaatttcatgtaaatatttttaagattctacttttcactcaagttatttCTAATAtcatcatttgtaatgaaaacctttgagttaaactgaaaaagaatgccaaacagaagcattttcactaatgGTCTCCGTCTTTTGGATCCGactgtataaaataattatacatataaataaaaaatataaactgaaCTTAAATTTCCATTCTATATTAAGAGaataattatcattttattgttttaaaaaacacaaaataactaTCAACACAAAGGTGCAAAACTATACTAACACTGCCACAGTACTAAGAGCAATGTAATACTACTATATGGGACATTATGTACAgttccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133457 True 560 lncRNA 0.31 1 10856983 10857542

Neighbor

gene id symbol gene type direction distance location
hdx hdx coding downstream 155020 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 194375 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 394049 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 459949 10384311 ~ 10397034 (-)
LOC113542757 itm2a coding downstream 522443 10326781 ~ 10334540 (-)
LOC113542771 tenm1 coding upstream 42479 10900021 ~ 11041414 (-)
LOC113542731 NA coding upstream 234155 11091697 ~ 11099390 (-)
asb12b asb12 coding upstream 510652 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 530960 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 624349 11481891 ~ 11543724 (-)
G112962 NA non-coding downstream 136 10854899 ~ 10856847 (-)
LOC113542794 NA non-coding downstream 13721 10815748 ~ 10843262 (-)
G112745 NA non-coding downstream 350040 10495298 ~ 10506943 (-)
G112691 NA non-coding downstream 408021 10448655 ~ 10448962 (-)
G112690 NA non-coding downstream 408370 10448399 ~ 10448613 (-)
G112964 NA non-coding upstream 98 10857640 ~ 10859416 (-)
G112967 NA non-coding upstream 2238 10859780 ~ 10859996 (-)
G112968 NA non-coding upstream 4184 10861726 ~ 10861943 (-)
G113195 NA non-coding upstream 85510 10943052 ~ 11019852 (-)
G113248 NA non-coding upstream 197240 11054782 ~ 11055121 (-)
LOC113542827 slc25a53 other downstream 883188 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 892983 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1263658 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1509049 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2491401 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 400909 11258451 ~ 11325468 (-)
G113398 NA other upstream 501596 11359138 ~ 11359579 (-)
G113516 NA other upstream 754431 11611973 ~ 11612569 (-)
G113674 NA other upstream 961336 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1221982 12079524 ~ 12112216 (-)

Expression


Co-expression Network