G113248


Basic Information

Item Value
gene id G113248
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11054782 ~ 11055121 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133753
ttgcccagaggtagcatatgtaaagaaaagagcagtgggcctaaaacagagccttgcgggacaccaaactttaccttagtatgcatagagaagtcaccatttatgtctacaaactgataatgataaGTCAAATAAGACGTGAGCCAGGAAAGGCccattcccttaatgcctactacattttctagtcttgaggagaatagcatgatcaatggcatcaaaagctgcactaaggtcaagcagcacaagcaaggagacacaaccctgatcagaggccagtagtaagtcatttaccactttaaccagtgctgtctctgtgctatgatgaggcctaaatcctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133753 True 340 lncRNA 0.44 1 11054782 11055121

Neighbor

gene id symbol gene type direction distance location
LOC113542771 tenm1 coding downstream 13368 10900021 ~ 11041414 (-)
hdx hdx coding downstream 352819 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 392174 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 591848 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 657748 10384311 ~ 10397034 (-)
LOC113542731 NA coding upstream 36576 11091697 ~ 11099390 (-)
asb12b asb12 coding upstream 313073 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 333381 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 426770 11481891 ~ 11543724 (-)
hdac3 hdac3 coding upstream 970660 12025781 ~ 12063137 (-)
G113195 NA non-coding downstream 34930 10943052 ~ 11019852 (-)
G112968 NA non-coding downstream 192839 10861726 ~ 10861943 (-)
G112967 NA non-coding downstream 194786 10859780 ~ 10859996 (-)
G112964 NA non-coding downstream 195366 10857640 ~ 10859416 (-)
G112963 NA non-coding downstream 197240 10856983 ~ 10857542 (-)
G113277 NA non-coding upstream 38975 11094096 ~ 11094302 (-)
G113167 NA non-coding upstream 76681 11131802 ~ 11143848 (-)
G113369 NA non-coding upstream 167329 11222450 ~ 11222672 (-)
G113415 NA non-coding upstream 395182 11450303 ~ 11450654 (-)
G113417 NA non-coding upstream 398450 11453571 ~ 11453825 (-)
LOC113542827 slc25a53 other downstream 1080987 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 1090782 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1461457 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1706848 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2689200 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 203330 11258451 ~ 11325468 (-)
G113398 NA other upstream 304017 11359138 ~ 11359579 (-)
G113516 NA other upstream 556852 11611973 ~ 11612569 (-)
G113674 NA other upstream 763757 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 1024403 12079524 ~ 12112216 (-)

Expression


Co-expression Network