G113277


Basic Information

Item Value
gene id G113277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11094096 ~ 11094302 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133782
CAGCAGTTGTATTAGATGACCTTTACAATGAAAATGTGTTGTGTTCAATGTAAAACCTAATGTCAGCTTCCTCTCTGTTTTACATCAAGAACTGGCATCTGCAGTCAATATCTGCATTCTTGCTTTTCTTAGTATTCACTTGCTTACTTCTTTTCTACATGCTTGCGCTGACATCTCTCCCAATATTTATAACAATTTGCAGATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133782 True 207 lncRNA 0.36 1 11094096 11094302

Neighbor

gene id symbol gene type direction distance location
LOC113542771 tenm1 coding downstream 52682 10900021 ~ 11041414 (-)
hdx hdx coding downstream 392133 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 431488 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 631162 10458823 ~ 10462934 (-)
LOC113542679 chmp1b,LOC104945803,LOC101476317 coding downstream 697062 10384311 ~ 10397034 (-)
asb12b asb12 coding upstream 273892 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 294200 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 387589 11481891 ~ 11543724 (-)
hdac3 hdac3 coding upstream 931479 12025781 ~ 12063137 (-)
LOC117597734 NA coding upstream 1203864 12298166 ~ 12310163 (-)
G113248 NA non-coding downstream 38975 11054782 ~ 11055121 (-)
G113195 NA non-coding downstream 74244 10943052 ~ 11019852 (-)
G112968 NA non-coding downstream 232153 10861726 ~ 10861943 (-)
G112967 NA non-coding downstream 234100 10859780 ~ 10859996 (-)
G112964 NA non-coding downstream 234680 10857640 ~ 10859416 (-)
G113167 NA non-coding upstream 37500 11131802 ~ 11143848 (-)
G113369 NA non-coding upstream 128148 11222450 ~ 11222672 (-)
G113415 NA non-coding upstream 356001 11450303 ~ 11450654 (-)
G113417 NA non-coding upstream 359269 11453571 ~ 11453825 (-)
G113455 NA non-coding upstream 379057 11473359 ~ 11473649 (-)
LOC113542827 slc25a53 other downstream 1120301 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 1130096 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1500771 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 1746162 9340373 ~ 9347934 (-)
LOC113542918 NA other downstream 2728514 8362373 ~ 8365582 (-)
LOC113542749 LOC108269078 other upstream 164149 11258451 ~ 11325468 (-)
G113398 NA other upstream 264836 11359138 ~ 11359579 (-)
G113516 NA other upstream 517671 11611973 ~ 11612569 (-)
G113674 NA other upstream 724576 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 985222 12079524 ~ 12112216 (-)

Expression


Co-expression Network