G113398


Basic Information

Item Value
gene id G113398
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11359138 ~ 11359579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU133937
gtgagcggaggccatccacaccggatccacgccgtctacaataatatcaacaaatcttcgactaaggtgcgttaaacatgtcaaacattcagcttgttcagtgtgttgagtgcaggatgtttagtcactcttcctccgtcaTTAGtattagctttatttgtgataaatgcatgttagttagctctctgacggagaagattgcagcattagaggtgcgcatccagactctagagagggttagtgagagtgagagcagcgtagtttctgtaggggaaagtctggatgccttaggcagggttagcaatcccccaactctggcattagagccctcacagcggggcgaatgggtgacgactcggcggcataatcgcaaagccaaagctaacgctaaggctcgcccacgggagcaccactcctctccgcttcacgtgtccaaaattcc

Function

NR:

description
PREDICTED: transmembrane protein 245-like isoform X2

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU133937 True 442 TUCP 0.50 1 11359138 11359579

Neighbor

gene id symbol gene type direction distance location
LOC113542731 NA coding downstream 259748 11091697 ~ 11099390 (-)
LOC113542771 tenm1 coding downstream 317724 10900021 ~ 11041414 (-)
hdx hdx coding downstream 657175 10666316 ~ 10701963 (-)
rps6kal rps6ka6,rps6kal,LOC107572332,LOC103359561,LOC104942467,LOC107746154,LOC107674878,LOC102207076 coding downstream 696530 10626540 ~ 10662608 (-)
hmgn6 hmgn5 coding downstream 896204 10458823 ~ 10462934 (-)
asb12b asb12 coding upstream 8615 11368194 ~ 11371193 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding upstream 28923 11388502 ~ 11398896 (-)
LOC113542750 LOC108268434,LOC108436714 coding upstream 122312 11481891 ~ 11543724 (-)
hdac3 hdac3 coding upstream 666202 12025781 ~ 12063137 (-)
LOC117597734 NA coding upstream 938587 12298166 ~ 12310163 (-)
G113369 NA non-coding downstream 136466 11222450 ~ 11222672 (-)
G113167 NA non-coding downstream 215290 11131802 ~ 11143848 (-)
G113277 NA non-coding downstream 264836 11094096 ~ 11094302 (-)
G113248 NA non-coding downstream 304017 11054782 ~ 11055121 (-)
G113195 NA non-coding downstream 339286 10943052 ~ 11019852 (-)
G113415 NA non-coding upstream 90724 11450303 ~ 11450654 (-)
G113417 NA non-coding upstream 93992 11453571 ~ 11453825 (-)
G113455 NA non-coding upstream 113780 11473359 ~ 11473649 (-)
G113456 NA non-coding upstream 114596 11474175 ~ 11475070 (-)
G113517 NA non-coding upstream 250857 11610436 ~ 11610971 (-)
LOC113542749 LOC108269078 other downstream 33670 11258451 ~ 11325468 (-)
LOC113542827 slc25a53 other downstream 1385343 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 1395138 9959576 ~ 9964000 (-)
si:ch211-153b23.4 si:ch211-153b23.4,LOC108269373,LOC108440096,LOC107570153,LOC107663089,LOC107573953,LOC107661545,LOC107746322 other downstream 1765813 9587335 ~ 9593325 (-)
fgf16 fgf16 other downstream 2011204 9340373 ~ 9347934 (-)
G113516 NA other upstream 252394 11611973 ~ 11612569 (-)
G113674 NA other upstream 459299 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 719945 12079524 ~ 12112216 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other upstream 810050 12169629 ~ 12174905 (-)
G113959 csnk1a1,LOC106604944 other upstream 961752 12321331 ~ 12368943 (-)

Expression


Co-expression Network