Gene
RNA
| Item | Value |
|---|---|
| gene id | G113585 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 11727061 ~ 11727392 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU134131 | True | 332 | lncRNA | 0.34 | 1 | 11727061 | 11727392 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113542750 | LOC108268434,LOC108436714 | coding | downstream | 183337 | 11481891 ~ 11543724 (-) |
| LOC113542810 | zc4h2,LOC108269407,LOC108436709,LOC103036162 | coding | downstream | 328165 | 11388502 ~ 11398896 (-) |
| asb12b | asb12 | coding | downstream | 355868 | 11368194 ~ 11371193 (-) |
| LOC113542731 | NA | coding | downstream | 627671 | 11091697 ~ 11099390 (-) |
| LOC113542771 | tenm1 | coding | downstream | 685647 | 10900021 ~ 11041414 (-) |
| hdac3 | hdac3 | coding | upstream | 298389 | 12025781 ~ 12063137 (-) |
| LOC117597734 | NA | coding | upstream | 570774 | 12298166 ~ 12310163 (-) |
| btk | btk,LOC107554824 | coding | upstream | 710447 | 12437839 ~ 12492799 (-) |
| atoh8 | atoh8,LOC107677004,LOC107753212,LOC107571829 | coding | upstream | 800099 | 12527491 ~ 12549293 (-) |
| spdl1 | spdl1 | coding | upstream | 854064 | 12581456 ~ 12662949 (-) |
| G113559 | NA | non-coding | downstream | 15056 | 11711769 ~ 11712005 (-) |
| G113517 | NA | non-coding | downstream | 116090 | 11610436 ~ 11610971 (-) |
| G113456 | NA | non-coding | downstream | 251991 | 11474175 ~ 11475070 (-) |
| G113455 | NA | non-coding | downstream | 253412 | 11473359 ~ 11473649 (-) |
| G113417 | NA | non-coding | downstream | 273236 | 11453571 ~ 11453825 (-) |
| G113594 | NA | non-coding | upstream | 14054 | 11741446 ~ 11741647 (-) |
| G113596 | NA | non-coding | upstream | 15269 | 11742661 ~ 11742874 (-) |
| G113604 | NA | non-coding | upstream | 30264 | 11757656 ~ 11757881 (-) |
| G113636 | NA | non-coding | upstream | 86165 | 11813557 ~ 11813791 (-) |
| G113690 | NA | non-coding | upstream | 165129 | 11892521 ~ 11892728 (-) |
| G113516 | NA | other | downstream | 114492 | 11611973 ~ 11612569 (-) |
| G113398 | NA | other | downstream | 367482 | 11359138 ~ 11359579 (-) |
| LOC113542749 | LOC108269078 | other | downstream | 401593 | 11258451 ~ 11325468 (-) |
| LOC113542827 | slc25a53 | other | downstream | 1753266 | 9965785 ~ 9973795 (-) |
| tmsb1 | NA | other | downstream | 1763061 | 9959576 ~ 9964000 (-) |
| G113674 | NA | other | upstream | 91486 | 11818878 ~ 11858016 (-) |
| LOC117597634 | LOC101884462,LOC101885893 | other | upstream | 352132 | 12079524 ~ 12112216 (-) |
| LOC113542864 | LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 | other | upstream | 442237 | 12169629 ~ 12174905 (-) |
| G113959 | csnk1a1,LOC106604944 | other | upstream | 593939 | 12321331 ~ 12368943 (-) |
| G114013 | NA | other | upstream | 696336 | 12423728 ~ 12424057 (-) |
