G113594


Basic Information

Item Value
gene id G113594
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11741446 ~ 11741647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134140
CTTGACCTTCTGTATCTTCTTCACATGACTCCCCAATCATAATCGGCGGTGACTTTAATAAAGCCATCAAAccagaattagaaaaaaaacacttgtacacataaaacacagaacTGGCAGACCACAGAAACAATATGGCAATGTATGTCTGACTTTGGACTTGGCGATTGCTGGTGACTGCAACACCCAAACACCAAGGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134140 True 202 lncRNA 0.41 1 11741446 11741647

Neighbor

gene id symbol gene type direction distance location
LOC113542750 LOC108268434,LOC108436714 coding downstream 197722 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 342550 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 370253 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 642056 11091697 ~ 11099390 (-)
LOC113542771 tenm1 coding downstream 700032 10900021 ~ 11041414 (-)
hdac3 hdac3 coding upstream 284134 12025781 ~ 12063137 (-)
LOC117597734 NA coding upstream 556519 12298166 ~ 12310163 (-)
btk btk,LOC107554824 coding upstream 696192 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 785844 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 839809 12581456 ~ 12662949 (-)
G113585 NA non-coding downstream 14054 11727061 ~ 11727392 (-)
G113559 NA non-coding downstream 29441 11711769 ~ 11712005 (-)
G113517 NA non-coding downstream 130475 11610436 ~ 11610971 (-)
G113456 NA non-coding downstream 266376 11474175 ~ 11475070 (-)
G113455 NA non-coding downstream 267797 11473359 ~ 11473649 (-)
G113596 NA non-coding upstream 1014 11742661 ~ 11742874 (-)
G113604 NA non-coding upstream 16009 11757656 ~ 11757881 (-)
G113636 NA non-coding upstream 71910 11813557 ~ 11813791 (-)
G113690 NA non-coding upstream 150874 11892521 ~ 11892728 (-)
G113691 NA non-coding upstream 155478 11897125 ~ 11897363 (-)
G113516 NA other downstream 128877 11611973 ~ 11612569 (-)
G113398 NA other downstream 381867 11359138 ~ 11359579 (-)
LOC113542749 LOC108269078 other downstream 415978 11258451 ~ 11325468 (-)
LOC113542827 slc25a53 other downstream 1767651 9965785 ~ 9973795 (-)
tmsb1 NA other downstream 1777446 9959576 ~ 9964000 (-)
G113674 NA other upstream 77231 11818878 ~ 11858016 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 337877 12079524 ~ 12112216 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other upstream 427982 12169629 ~ 12174905 (-)
G113959 csnk1a1,LOC106604944 other upstream 579684 12321331 ~ 12368943 (-)
G114013 NA other upstream 682081 12423728 ~ 12424057 (-)

Expression


Co-expression Network