G113889


Basic Information

Item Value
gene id G113889
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12021998 ~ 12057353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU134458
catttttttgacaTCACAAAAGCCTGCCAtattaacaggggtgtgtagactttttatatccactgtatattccAAATGGAAACGAGGTGCTTGTTCTTTTGGGAAATATCAACTCCGAAGTGAATCATTTGGCCACAGGAAAGAAGTCAgggtgcttttatttttagtcattagGTCGTGCAGACCAAACTGCAATCACATACAACTTGATCATTATGTAGTACATGGGGTATCTAGCAACAACCTAGCAACCAACTTGAATATCAAAGCAACTACCTAACAACAACCTAACAACCAACCCATTCAGCATAGCAACTACCTAGCAATGTCCTAGCAACCCACTGGGCTAGCATAGCAAACACCTAGCGGTAACCTAGCAACCTTTGCTACCAACTGGGTTAACCTAGCAACCACTTAGCAACACCAAAGCAATTAATTAggttagcatagcaaccacctagcaacaccctaacAATCAGCTGGGTTAGCTGAGCAATCACCTAGCAACCAATGGGGTTAGTCTAGCAACCAcgtagcaacaccctagcaaccaagtGGCTTGGCCTATCAACACCATAGGTGAACCATTAGGCTAAATGTCTGCTGGATTAATTTTTGGCTCCggtgacattaaaaataattttaacagaAGAAATAGACAGATTGACCCACTGCCtcatcagatttttattaaatcaattcattcacacacaaacctaCAAGCAAAATCTTCAGATTTTGACTGATAAAAAGGAAACCAGCCCCACTCTAATTCCtatgattaaaaataacttgTACAGTACTTGGCCataattttaagtgtttttattacCGTTAAAAATGACTTTGTTTTAGTGATGCACTATGCATCCCTCAACAAACCGCAGTTCTGTTCTTCAGCATTTGGATGAGTCCTATCTCCACTCTGACATTGCATTCCAGTGTTAACAGAAACTGAAATACATTTCATGTTATTATAACCTCTGATTACAATGTACAGTCTCCTAGCGAGTGagaacgtttttttttttcttttaacgaTTTATGAATTACGAATTGTTCATGAACCAATTCGAGGGCATTTACAGTTATATAGCACACCTATCTCTTCCAACATGGATAAGTAATTGTCAACAATCATTTGCAACAGTGtctttagggttttttttgtgtgtgtctttagggtatttaacacttatgtactgtttgtttaataaacatgcTAAAATTGAGCGTGCATAGTTTTACTATGCATTTATTTGCTATATTTAGAGAGATAAGCCCAATTGGCTTAGTGGTGGTGCTACAGTAAAGTGTTTTGGTTCATATCTCAAATACCCTAAGTCCTACACTGAAAATTCTTTATGCTACATATACATTGGGTTCTctcaaacaaaattttttttagcatcacCCACttttagctaatttgcataatatgcaaaacctacatTTGAGAACttgtcctaggatttttgtcctGTCTTCAcaatggtgtcaaactactcacAGAGAGAGTAGTCATAGTGTGTGACCCTCAGTAAGtaacaaaaacatgttgatattTGTAAATAGTATGGCTGCCACATATCAATCAATTCTCATGAGGTGGAAACTAATTCACTTAAACAGCTATAAGACAGGGTTATTGTTGAGATATTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134458 True 1665 lncRNA 0.37 2 12021998 12057353

Neighbor

gene id symbol gene type direction distance location
LOC113542750 LOC108268434,LOC108436714 coding downstream 478274 11481891 ~ 11543724 (-)
LOC113542810 zc4h2,LOC108269407,LOC108436709,LOC103036162 coding downstream 623102 11388502 ~ 11398896 (-)
asb12b asb12 coding downstream 650805 11368194 ~ 11371193 (-)
LOC113542731 NA coding downstream 922608 11091697 ~ 11099390 (-)
LOC113542771 tenm1 coding downstream 980584 10900021 ~ 11041414 (-)
LOC117597734 NA coding upstream 240813 12298166 ~ 12310163 (-)
btk btk,LOC107554824 coding upstream 380486 12437839 ~ 12492799 (-)
atoh8 atoh8,LOC107677004,LOC107753212,LOC107571829 coding upstream 470138 12527491 ~ 12549293 (-)
spdl1 spdl1 coding upstream 524103 12581456 ~ 12662949 (-)
hspa9 hspa9,LOC106604950 coding upstream 804297 12861650 ~ 12904853 (-)
G113893 NA non-coding downstream 3724 12018054 ~ 12018274 (-)
G113756 NA non-coding downstream 14503 12007293 ~ 12007495 (-)
G113715 NA non-coding downstream 55264 11966027 ~ 11966734 (-)
G113712 NA non-coding downstream 59256 11960139 ~ 11962742 (-)
G113691 NA non-coding downstream 124635 11897125 ~ 11897363 (-)
G113954 NA non-coding upstream 124012 12181365 ~ 12183096 (-)
G113972 NA non-coding upstream 200862 12258215 ~ 12263170 (-)
G113979 NA non-coding upstream 221469 12278822 ~ 12283054 (-)
G113985 NA non-coding upstream 234639 12291992 ~ 12292464 (-)
G113961 NA non-coding upstream 319960 12377313 ~ 12377780 (-)
G113674 NA other downstream 163982 11818878 ~ 11858016 (-)
G113516 NA other downstream 409429 11611973 ~ 11612569 (-)
G113398 NA other downstream 662419 11359138 ~ 11359579 (-)
LOC113542749 LOC108269078 other downstream 696530 11258451 ~ 11325468 (-)
LOC113542827 slc25a53 other downstream 2048203 9965785 ~ 9973795 (-)
LOC117597634 LOC101884462,LOC101885893 other upstream 22171 12079524 ~ 12112216 (-)
LOC113542864 LOC108427892,LOC108268827,LOC107740141,LOC107593202,LOC106612226,LOC107554835 other upstream 112276 12169629 ~ 12174905 (-)
G113959 csnk1a1,LOC106604944 other upstream 263978 12321331 ~ 12368943 (-)
G114013 NA other upstream 366375 12423728 ~ 12424057 (-)
timm8a timm8a,LOC107742474,LOC107680336,LOC107593201 other upstream 443587 12500940 ~ 12504810 (-)

Expression


Co-expression Network